SRR2132749_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2132749_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4312094
Sequences flagged as poor quality	0
Sequence length	50
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	250769	5.815480831354789	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	53493	1.240534181304953	No Hit
AACGAGTGGAATCACTGCTGAGTACATGGGAACGAGTGGAATCACTGCTG	23903	0.5543246506221803	No Hit
TACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	19687	0.4565531270886024	No Hit
AATGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	6274	0.14549775584669536	No Hit
ATCGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	5836	0.13534027783253333	No Hit
ACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	5697	0.13211678595132667	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4349	0.10085587188034398	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACGAGT	5510	43.48272	1
GAGTACT	40800	39.330715	20
AGTACTT	40850	38.927174	21
GTACTTT	40220	38.84233	22
AACGAGT	73800	38.775505	1
ATCGAGT	1825	38.76867	1
ACGAGTG	81340	38.1641	2
TACTTTT	41210	37.66945	23
CGAGTGG	84875	37.609245	3
ACTTTTT	41390	37.441853	24
CATGGGG	19495	37.02156	25
GCTGAGT	88970	37.014675	17
TGAGTAC	87640	37.00162	19
GAGTGGA	88340	36.933037	4
GTGGAAT	89755	36.818497	6
CTGAGTA	88800	36.711483	18
CTGCTGA	90165	36.675358	15
AGTGGAA	89045	36.672318	5
TGCTGAG	90160	36.616398	16
TGGAATC	90375	36.56908	7