FastQCFastQC Report
Thu 26 May 2016
SRR2132747_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2132747_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2860324
Sequences flagged as poor quality0
Sequence length50
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT1939916.782133772257969No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1076593.7638743023517613No Hit
TACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT149350.5221436452653615No Hit
AACGAGTGGAATCACTGCTGAGTACATGGGAACGAGTGGAATCACTGCTG138160.4830222030790917No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA84060.29388279090061126No Hit
ACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT61800.2160594394201496No Hit
AATGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT48650.1700856266632731No Hit
ATCGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT44060.15403849354129112No Hit
AACGAGTGGAATCACTGCTGAGTACATGGGGAGGCATTCAGGCAGCGAGA40940.14313063834726414No Hit
AACGAGTGGAATCACTGCTGAGTACATGGGGGTTAAGCGACTAAGCGTAC38980.13627826777665747No Hit
AACGTGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT29630.1035896632689164No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACGAGT38400.042.8164981
AACGAGT490950.039.4553341
GAGTACT304350.039.0152920
AGTACTT304250.038.67383621
GTACTTT300500.038.6147522
ATCGAGT12750.038.3748131
ACGAGTG549100.038.329232
CGAGTGG570850.037.9595683
GAGTGGA590700.037.4630744
ACTTTTT310100.037.3058224
GTGGAAT604500.037.071126
TACTTTT312050.037.04450623
TGGAATC607200.036.9036987
GCTGAGT605850.036.878717
TGAGTAC598550.036.87643419
CTGCTGA608650.036.8210815
AGTGGAA601200.036.7805865
CATGGGG125450.036.7181925
GGAATCA610600.036.712628
TGCTGAG610350.036.69329516