SRR2132746_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2132746_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4008421
Sequences flagged as poor quality	0
Sequence length	50
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	244112	6.0899790715596	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	55260	1.3785977071769657	No Hit
TACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	18989	0.47372768479159255	No Hit
AACGAGTGGAATCACTGCTGAGTACATGGGAACGAGTGGAATCACTGCTG	16654	0.4154753205813462	No Hit
ACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	6364	0.15876575838715543	No Hit
AATGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	6101	0.15220457132621548	No Hit
ATCGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	5719	0.1426746342262951	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4512	0.11256302668806496	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACGAGT	4705	42.20602	1
AACGAGT	62540	40.372383	1
ACGAGTG	69100	39.43348	2
GAGTACT	38010	39.330025	20
AGTACTT	38100	38.908028	21
GTACTTT	37740	38.85951	22
CGAGTGG	72060	38.774868	3
GAGTGGA	74655	38.305676	4
GTGGAAT	76255	38.00057	6
AGTGGAA	75480	37.8428	5
ATCGAGT	1560	37.722103	1
TGGAATC	76900	37.670906	7
TGAGTAC	75875	37.654102	19
GCTGAGT	76935	37.61852	17
CTGAGTA	76225	37.59664	18
GAATCAC	77295	37.495003	9
ACTTTTT	38815	37.47158	24
TGCTGAG	77445	37.441795	16
GGAATCA	77395	37.4385	8
TACTTTT	38995	37.422718	23