SRR2132744_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2132744_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2489217
Sequences flagged as poor quality	0
Sequence length	50
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	136502	5.48373243473751	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	103524	4.158898159541735	No Hit
AACGAGTGGAATCACTGCTGAGTACATGGGAACGAGTGGAATCACTGCTG	14678	0.5896633359004056	No Hit
TACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	10502	0.42189973794972474	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	8055	0.32359573311607626	No Hit
ACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	3950	0.1586844377167599	No Hit
AATGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	3378	0.13570532420435824	No Hit
ATCGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	3183	0.12787153550694857	No Hit
AACGAGTGGAATCACTGCTGAGTACATGGGGGTTAAGCGACTAAGCGTAC	2722	0.10935165556076468	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2499	0.10039301515295775	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACGAGT	2635	42.154644	1
GAGTACT	22095	38.7476	20
AGTACTT	22200	38.227444	21
GTACTTT	21775	38.14519	22
ATCGAGT	890	38.13522	1
AACGAGT	37895	37.570427	1
CATGGGG	9675	37.059757	25
ACGAGTG	41685	36.81207	2
ACTTTTT	22560	36.67163	24
TACTTTT	22660	36.56804	23
CGAGTGG	43285	36.383755	3
TGAGTAC	44725	35.820026	19
GAGTGGA	44995	35.7247	4
GCTGAGT	45480	35.71873	17
CTGAGTA	45095	35.682224	18
GTGGAAT	45590	35.68171	6
CTGCTGA	45880	35.53677	15
TGCTGAG	45900	35.5117	16
TGGAATC	45825	35.499245	7
AGTGGAA	45340	35.417477	5