SRR2132743_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2132743_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4493365
Sequences flagged as poor quality	0
Sequence length	50
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	229996	5.118569268243288	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	78804	1.7537858598177536	No Hit
AACGAGTGGAATCACTGCTGAGTACATGGGAACGAGTGGAATCACTGCTG	17867	0.3976307288635577	No Hit
TACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	17774	0.3955610105121663	No Hit
AACGAGTGGAATCACTGCTGAGTACATGGGGAGGCATTCAGGCAGCGAGA	6585	0.14654941230013585	No Hit
ACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	6165	0.1372022971648197	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6050	0.13464296802062597	No Hit
AATGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	5851	0.130214215849369	No Hit
ATCGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	5083	0.11312234817336228	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACGAGT	4470	42.250183	1
GAGTACT	35840	39.220165	20
AACGAGT	59100	39.122456	1
AGTACTT	36140	38.65721	21
GTACTTT	36055	38.388382	22
ACGAGTG	65220	38.319725	2
CGAGTGG	67935	37.829796	3
ATCGAGT	1440	37.646786	1
CATGGGG	16870	37.306053	25
GAGTGGA	70550	37.182636	4
ACTTTTT	37030	37.13999	24
TGAGTAC	70915	37.00037	19
GTGGAAT	71950	36.941006	6
GCTGAGT	72005	36.82825	17
CTGAGTA	71420	36.828068	18
TACTTTT	37550	36.736977	23
TGCTGAG	72285	36.722115	16
TGGAATC	72475	36.693436	7
AGTGGAA	71660	36.63002	5
CTGCTGA	72560	36.5981	15