SRR2132737_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2132737_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3676674
Sequences flagged as poor quality	0
Sequence length	50
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	185011	5.032020788353822	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	45800	1.245691078404014	No Hit
TACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	14656	0.3986211450892845	No Hit
AACGAGTGGAATCACTGCTGAGTACATGGGAACGAGTGGAATCACTGCTG	9398	0.25561145752927783	No Hit
AACGAGTGGAATCACTGCTGAGTACATGGGGAGGCATTCAGGCAGCGAGA	5449	0.14820460013588369	No Hit
ACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	4892	0.13305503833083923	No Hit
AATGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	4682	0.1273433543468907	No Hit
ATCGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	4220	0.1147776495822039	No Hit
AACGAGTGGAATCACTGCTGAGTACATGGGGGTTAAGCGACTAAGCGTAC	3981	0.10827720923856725	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACGAGT	3725	43.13605	1
AACGAGT	46840	40.67118	1
ACGAGTG	51920	39.79089	2
GAGTACT	29265	39.747246	20
CGAGTGG	54075	39.272007	3
AGTACTT	29390	39.256363	21
GTACTTT	29065	39.165546	22
GAGTGGA	56130	38.602936	4
GTGGAAT	57130	38.491215	6
TGAGTAC	56340	38.40306	19
CTGAGTA	56785	38.23382	18
TGGAATC	57605	38.1766	7
AGTGGAA	56805	38.17313	5
GGAATCA	57730	38.166344	8
GAATCAC	57865	38.10996	9
GCTGAGT	57570	38.109856	17
AATCACT	58145	37.865906	10
CTGCTGA	58435	37.726414	15
TGCTGAG	58510	37.64422	16
ATCACTG	58670	37.63529	11