SRR2132733_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2132733_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3566767
Sequences flagged as poor quality	0
Sequence length	50
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	165761	4.647373938359304	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	33227	0.9315719249393077	No Hit
TACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	13114	0.3676719000708485	No Hit
AACGAGTGGAATCACTGCTGAGTACATGGGAACGAGTGGAATCACTGCTG	10572	0.2964028768910333	No Hit
ACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	6509	0.18249019350016416	No Hit
AATGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	4204	0.11786584321319558	No Hit
ATCGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	3866	0.10838947427740583	No Hit
AACGAGTGGAATCACTGCTGAGTACATGGGGAGGCATTCAGGCAGCGAGA	3634	0.10188498435698211	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACGAGT	3470	42.501945	1
AACGAGT	44100	39.776165	1
GAGTACT	26070	39.083637	20
GTACTTT	26065	38.50038	22
ACGAGTG	49465	38.49547	2
AGTACTT	26375	38.31475	21
CGAGTGG	51475	38.00098	3
ATCGAGT	1115	37.76336	1
GAGTGGA	53810	37.231564	4
GTGGAAT	54525	37.181595	6
TGAGTAC	53975	37.12321	19
CATGGGG	14830	37.052605	25
TGGAATC	54840	36.97242	7
GCTGAGT	54890	36.96925	17
CTGAGTA	54370	36.954655	18
GAATCAC	55090	36.835552	9
AGTGGAA	54400	36.83026	5
ACTTTTT	27195	36.827824	24
GGAATCA	55070	36.818005	8
TGCTGAG	55345	36.677242	16