SRR2132727_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2132727_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2200787
Sequences flagged as poor quality	0
Sequence length	50
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	109869	4.9922595871386015	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	75902	3.4488571588254566	No Hit
TACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	8817	0.4006294112060822	No Hit
AACGAGTGGAATCACTGCTGAGTACATGGGAACGAGTGGAATCACTGCTG	7514	0.34142331811302046	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6000	0.2726297456319035	No Hit
ACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	5157	0.23432526637062107	No Hit
AATGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	2726	0.12386478109876148	No Hit
ATCGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	2584	0.1174125437854731	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACGAGT	2055	42.37078	1
AACGAGT	28955	39.595375	1
GAGTACT	17615	38.09975	20
ACGAGTG	32480	38.041058	2
CGAGTGG	33655	37.632107	3
GTACTTT	17555	37.415497	22
AGTACTT	17950	37.094585	21
ATCGAGT	705	36.895557	1
GAGTGGA	35070	36.868168	4
GTGGAAT	35715	36.768227	6
AGTGGAA	35615	36.30317	5
TGGAATC	36215	36.29374	7
CATGGGG	7990	36.231102	25
ACTTTTT	17955	36.202995	24
GGAATCA	36615	35.975353	8
GAATCAC	36580	35.961666	9
TGAGTAC	35755	35.743896	19
CTGAGTA	36025	35.6714	18
AATCACT	36870	35.66091	10
GCTGAGT	36430	35.619007	17