SRR2132720_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2132720_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2643402
Sequences flagged as poor quality	0
Sequence length	50
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	140630	5.320038344527242	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	109807	4.1540030612067325	No Hit
AACGAGTGGAATCACTGCTGAGTACATGGGAACGAGTGGAATCACTGCTG	15868	0.6002870543337714	No Hit
TACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	10834	0.40985063944114436	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	8487	0.3210635385764254	No Hit
ACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	7193	0.27211146847887685	No Hit
AATGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	3501	0.13244296554213092	No Hit
ATCGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	3269	0.12366639656019023	No Hit
AACGAGTGGAATCACTGCTGAGTACATGGGGGTTAAGCGACTAAGCGTAC	2797	0.10581061828658675	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACGAGT	2940	42.205235	1
GAGTACT	22800	37.02574	20
AACGAGT	39540	36.833126	1
AGTACTT	22910	36.627144	21
GTACTTT	22800	36.244324	22
ATCGAGT	975	35.941628	1
ACGAGTG	44735	35.455566	2
ACTTTTT	23385	35.20662	24
TACTTTT	23550	35.053345	23
CGAGTGG	46735	34.77559	3
CATGGGG	11625	34.512283	25
GAGTGGA	48495	34.28476	4
GTGGAAT	49715	33.883404	6
GCTGAGT	49830	33.83853	17
TGAGTAC	49010	33.78087	19
CTGAGTA	49385	33.72033	18
TGCTGAG	50260	33.64093	16
TGGAATC	50135	33.630196	7
AGTGGAA	49415	33.621643	5
CTGCTGA	50415	33.568043	15