SRR2099306_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099306_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	787154
Sequences flagged as poor quality	0
Sequence length	47
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGCTAGTGAATAACACTGGACTTCTGATGTCCTGAGGTGGAAGTC	2872	0.3648587188783897	No Hit
TCTGCTGGGACACCCAAGGACACAGGAGGTTCAAAAAGCAATAGTGA	1235	0.15689433071546358	No Hit
ACTGCTAGTAATGTAGCGTTCGCAGCAGCGTATACCGCAGGGTATGC	940	0.11941754726521113	No Hit
ACTGCTATTAGGCATCTGGGCCTGAAGATATAAGCATGGCGACAGCC	857	0.10887323192158078	No Hit
ACTGGTAGCGCGGGCAAGGTGCAGTGTGTTCCTTCAGTTCAGATCAC	841	0.10684059281919421	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGAGG	25	6.7365974E-5	41.00032	13
TGTTTCG	20	0.00111226	40.99771	12
CGTCACG	20	0.00111226	40.99771	9
CACGATT	35	2.524066E-7	40.98469	11
CCGCCTA	25	6.751757E-5	40.98469	11
ATACCCG	30	4.116868E-6	40.98469	10
TGCTAGC	15910	0.0	40.843098	3
GCTAGCG	4300	0.0	40.807026	4
TGCTAGA	20245	0.0	40.683823	3
TGCTAGG	18800	0.0	40.670605	3
CTAGCCG	1325	0.0	40.533585	5
GCTAGAC	4395	0.0	40.298096	4
CTAGTCG	1165	0.0	40.29389	5
GCTAGCC	4060	0.0	40.290855	4
GCTAGCT	3500	0.0	40.11919	4
GCTAGGC	3755	0.0	40.069668	4
CTAGCGA	1055	0.0	40.026203	5
CTGCTAG	74040	0.0	39.98277	2
CTAGACG	1200	0.0	39.972767	5
GCTAGTC	3775	0.0	39.965984	4