SRR2099304_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099304_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	779369
Sequences flagged as poor quality	0
Sequence length	47
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCTCACCTTTCGCGCAAGCGCTGAAAGCGCAGTGTGTTGCCAATC	3137	0.4025051034875649	No Hit
CATCTGATCACTAAAACCCAGAGCGCGGTGATGGGTGGGTGTCGTCG	1651	0.21183803820783226	No Hit
GATCTGACAAAAATTATTGACGACCCAAGACGTCACGGTTTCGGTGT	1069	0.13716224278871755	No Hit
GATCTGACAGTCGGAGCTGTAAATCATGGATCTGACTTTTTTTTTTT	987	0.12664091078808626	No Hit
GATCTGACTAAATCCACGGCAAAAGCTTCCTGGAGATCAAATGTGCA	895	0.11483648951908532	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTTA	25	6.728455E-5	41.008667	8
GATCGCG	25	6.728455E-5	41.008667	9
CCGATTA	20	0.0011107926	41.008667	8
ACCGCAC	20	0.0011107926	41.008667	7
CCGGATA	70	0.0	41.008667	8
CGCGAAC	45	9.567884E-10	41.008667	9
CACGTAA	55	3.6379788E-12	41.008667	8
CGCGTAT	25	6.728455E-5	41.008667	8
CCGCATA	25	6.728455E-5	41.008667	8
GTACCGG	25	6.7488574E-5	40.987617	12
TACGCGG	20	0.0011136018	40.987614	13
GTCTCGT	35	2.5238842E-7	40.984985	10
ATTGCCG	80	0.0	40.982357	11
TCTGACG	13240	0.0	40.884773	3
TCTGACA	36630	0.0	40.818344	3
CTGACGT	1915	0.0	40.68745	4
CTGACGG	3520	0.0	40.60091	4
TCTGACC	12525	0.0	40.599403	3
CTGACGA	5485	0.0	40.560078	4
CTGACAA	19620	0.0	40.559288	4