FastQCFastQC Report
Thu 26 May 2016
SRR2099302_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2099302_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences699568
Sequences flagged as poor quality0
Sequence length47
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACTGAATAAAAAAACGACTCACTATAGTGAGTCGTATTACCGGC19850.28374654072227434No Hit
TGCACTGAATCTGTAGTCTGATTTTTTTTTTTTTTTTTTTTTTTTTT12800.18297006152368317No Hit
TGCACTGAAGGGAAGATATTGAGTACTACCTTCAGTTACTTGCCGAA12540.17925348214898337No Hit
GACACTGACAGTCTGGTGATCGGTCGCTGGGTGGAAGCGGGCGAAGC9990.14280241520481213No Hit
TGCACTGACCGTCCACAGTGCAAGCTTGTGGACGGGACTGATCGTCG9980.14265946984424674No Hit
TGCACTGAGCCCCACGAGAAAGAGAAGGCAGATTCTCTGGCCAAGGA9560.1366557647005009No Hit
TGCAGCGAATTGGCGCCTGATGCCCTGGTGGAGCCGCCTGGGCAAGA9400.13436863893145484No Hit
TGCACTGAAAAAGAATGGTGGGCTGTTGGTACGTAATGGGCGACAAC9300.13293918532580107No Hit
TGCACTGAATAAAAAAACGGCCGACGATCAGTCATAAAAAAAATCAG8230.11764403174530569No Hit
TGCAATGCAACGAAAGTAATAATCTCCATCACTCGTTCACTGGAGAA8060.11521396061569425No Hit
TGCACTGAATTCACTGTACCGCGACGCGGCGCGTGCGCGGGCGGGGC7890.11278388948608284No Hit
GACACTGACAGTCTGGTGGATCGGTCGCTGGGTGGAAGCGGGCGAAG7600.10863847402968689No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACGTA900.041.008879
ATCGTTA600.041.008879
TCGGATC800.041.008879
CTGTTCG200.001110687641.008875
GATATCG256.727548E-541.008877
GCGTCGA304.0995546E-641.008879
AATCGTT553.6379788E-1241.008878
AGGTCGC506.002665E-1141.008878
TAGGGCG200.001112251840.9971416
TTTCGCG304.1136846E-640.9883520
ATCGCGG200.001114209540.98248737
GCAACGC200.001114601440.97955711
CGTCCAC9050.040.5325410
CACTGAC128950.040.513043
CACTGAA185750.040.4098853
ACTGACC41150.040.3112684
ACTGAGA55150.040.265284
CACTGAG185500.040.232243
ACTGAGG62100.040.150394
ACTGAAA49650.039.811234