SRR2099302_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099302_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	699568
Sequences flagged as poor quality	0
Sequence length	47
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TGCACTGAATAAAAAAACGACTCACTATAGTGAGTCGTATTACCGGC	1985	0.28374654072227434	No Hit
TGCACTGAATCTGTAGTCTGATTTTTTTTTTTTTTTTTTTTTTTTTT	1280	0.18297006152368317	No Hit
TGCACTGAAGGGAAGATATTGAGTACTACCTTCAGTTACTTGCCGAA	1254	0.17925348214898337	No Hit
GACACTGACAGTCTGGTGATCGGTCGCTGGGTGGAAGCGGGCGAAGC	999	0.14280241520481213	No Hit
TGCACTGACCGTCCACAGTGCAAGCTTGTGGACGGGACTGATCGTCG	998	0.14265946984424674	No Hit
TGCACTGAGCCCCACGAGAAAGAGAAGGCAGATTCTCTGGCCAAGGA	956	0.1366557647005009	No Hit
TGCAGCGAATTGGCGCCTGATGCCCTGGTGGAGCCGCCTGGGCAAGA	940	0.13436863893145484	No Hit
TGCACTGAAAAAGAATGGTGGGCTGTTGGTACGTAATGGGCGACAAC	930	0.13293918532580107	No Hit
TGCACTGAATAAAAAAACGGCCGACGATCAGTCATAAAAAAAATCAG	823	0.11764403174530569	No Hit
TGCAATGCAACGAAAGTAATAATCTCCATCACTCGTTCACTGGAGAA	806	0.11521396061569425	No Hit
TGCACTGAATTCACTGTACCGCGACGCGGCGCGTGCGCGGGCGGGGC	789	0.11278388948608284	No Hit
GACACTGACAGTCTGGTGGATCGGTCGCTGGGTGGAAGCGGGCGAAG	760	0.10863847402968689	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGTA	90	0.0	41.00887	9
ATCGTTA	60	0.0	41.00887	9
TCGGATC	80	0.0	41.00887	9
CTGTTCG	20	0.0011106876	41.00887	5
GATATCG	25	6.727548E-5	41.00887	7
GCGTCGA	30	4.0995546E-6	41.00887	9
AATCGTT	55	3.6379788E-12	41.00887	8
AGGTCGC	50	6.002665E-11	41.00887	8
TAGGGCG	20	0.0011122518	40.99714	16
TTTCGCG	30	4.1136846E-6	40.98835	20
ATCGCGG	20	0.0011142095	40.982487	37
GCAACGC	20	0.0011146014	40.979557	11
CGTCCAC	905	0.0	40.53254	10
CACTGAC	12895	0.0	40.51304	3
CACTGAA	18575	0.0	40.409885	3
ACTGACC	4115	0.0	40.311268	4
ACTGAGA	5515	0.0	40.26528	4
CACTGAG	18550	0.0	40.23224	3
ACTGAGG	6210	0.0	40.15039	4
ACTGAAA	4965	0.0	39.81123	4