SRR2099277_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099277_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	276748
Sequences flagged as poor quality	0
Sequence length	43
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCTAGCACGCTGTCCGACGATCTTATGGATCTAGCTTTTTT	358	0.12935956176738406	No Hit
GATCTAGCTCTCAGATCCCACAGATCTAGCTTTTTTTTTTTTT	341	0.12321678928122336	No Hit
GATCTAGCAAGGGGCCCAGGCCCTTCACCTACCTCCCACGAGC	322	0.11635133767904375	No Hit
AATGTAGCGTACTGTTCGCAGCAGCGTATACCGCAGGGTATGC	301	0.10876320696084525	No Hit
GATCTAGCCATTTGATCTAGCTTTTTTTTTTTTTTTTTTTTTT	280	0.10117507624264672	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTCATA	20	0.0018355077	37.016457	11
ATCTCCG	20	0.0018355077	37.016457	10
TACGGTG	20	0.0018355077	37.016457	11
GACGGTA	20	0.0018355077	37.016457	11
ACGCTGT	55	1.2732926E-11	37.016457	9
AATCGAG	25	1.2279849E-4	37.016457	9
ATTTCGG	25	1.2279849E-4	37.016457	9
TTTCGGT	35	5.5911914E-7	37.016453	10
CGTCGAG	55	1.2732926E-11	37.009766	8
GTCATAC	20	0.0018371387	37.00976	12
CGGAATA	25	1.2292928E-4	37.00976	8
CGGCGGT	20	0.0018371387	37.00976	8
TTAGAAC	25	1.2292928E-4	37.00976	12
CCTCGTG	30	8.274177E-6	37.00976	8
CATTACG	20	0.0018371387	37.00976	8
CCGTACG	25	1.2292928E-4	37.00976	8
CGGTCTG	25	1.2292928E-4	37.00976	8
CGCACTA	25	1.2292928E-4	37.00976	8
CGCGTTG	20	0.0018371387	37.00976	8
GGCGATC	20	0.0018371387	37.00976	13