SRR2099276_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099276_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	611896
Sequences flagged as poor quality	0
Sequence length	43
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TGCACGTAAACTTAGTGGTGGCCCGTGCCTGTAATCCCAGTAC	1621	0.2649142991619491	No Hit
TGCACGTAATTCCGAAACCCAGGATGGAGTCCCACATCGGGCT	1525	0.2492253585576634	No Hit
TGCACGTACGTGCGGGAGTCGTATTACCGGCCGACGATACGTG	1442	0.23566096199354136	No Hit
TGCACGTACTCTTCGATCGTCAATGCACGTATTTTTTTTTTTT	1256	0.20526363957273785	No Hit
TACACGTGTCGCGGCGGCTCGCGACGCATGCCGTTAACACTGG	1070	0.17486631715193432	No Hit
TGCACGTATGCTGCTGGTACCTGTGTAGCTGTTGTACCAACAG	1059	0.17306862604102657	No Hit
TGCACGTACTGCCGAGGCCACCCCGCTTCCCTGCAGCTCTGAG	1039	0.16980009674846705	No Hit
TACACGCAAGGGGGGCACCTGTGTGCATGCATTTGCGTCTGCA	1007	0.16457044988037184	No Hit
TGCCAGTAGAATGTGCCCGGGGCGTATTGAGAGCTACGTAAAA	980	0.16015793533541647	No Hit
TACACGCAAGGGGCGCACCTGTGTGCATGCATTTGCGTCTGCA	773	0.12632865715742544	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCCGTT	35	5.5634155E-7	37.052498	8
ATAATCG	25	1.2227036E-4	37.052498	8
ACGGGTA	20	0.001828486	37.052498	8
ACGGATA	20	0.001828486	37.052498	8
ATAGTCG	60	0.0	37.052498	8
AATACCG	20	0.001828486	37.052498	8
CGAACTT	25	1.2232931E-4	37.049465	5
TACCCGG	35	5.5669807E-7	37.049465	7
TATCGCG	25	1.2232931E-4	37.049465	7
TACCGCG	25	1.2232931E-4	37.049465	7
GTAGGTA	180	0.0	37.04946	6
CGTACGG	705	0.0	37.04946	5
GTAAGCG	80	0.0	37.04946	6
TATACGG	55	1.2732926E-11	37.04946	7
CCGTACT	45	2.588422E-9	37.040363	4
ACGTACT	3835	0.0	37.040363	4
GTTAGGT	30	8.290141E-6	37.010063	10
CGAGGTA	35	5.6207864E-7	37.004005	12
GCTCGTA	255	0.0	36.970745	2
CACGTAC	12780	0.0	36.90994	3