SRR2099272_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099272_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1037546
Sequences flagged as poor quality	0
Sequence length	43
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATCTGCACGGTAGAGGGTATGCCGAGGCCCACCCCGACCAAC	2609	0.25145873050447887	No Hit
AGTCTGCATGAATGCGGATGAAGGTGTCCTGCGCCAGGTCGGC	2522	0.2430735601120336	No Hit
AGTCTGCAGGAAGGCCAGCGTCTGCGACACGCCGACATGCGCC	1801	0.17358266525050456	No Hit
AGCCTCCAAGCTACCGAACCTGCCGATGACTGGTGGCGCCGGT	1715	0.165293876126938	No Hit
AGTCTGCATTCAAGGCAAGCTCATGGAGCTGCATGGGGAAGGC	1601	0.15430641147476834	No Hit
AATCTGCACGGTAGGAGGGTATGCCGAGGCCCACCCCGACCAA	1176	0.1133443722013289	No Hit
AGTCTGCAAAACTGGGGCTGGAGAGATGGCTCAGCGGTTAAGA	1063	0.10245328881803793	No Hit
AGTCTGCAGGTAAGAGGGATGGCTGGTGACAGAGGGAAGGACT	1042	0.10042928217158566	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACGCG	20	0.0018046256	37.154163	36
TAAACGG	20	0.001837908	37.01616	9
GCACGTT	345	0.0	37.009018	6
GCGAACT	40	3.8293365E-8	37.003662	10
CTGCACG	6595	0.0	36.665245	4
TCTGCAA	21935	0.0	36.512684	3
TCTGCAG	30270	0.0	36.482365	3
TGCACGG	2515	0.0	36.41865	5
TGCACCG	940	0.0	36.416695	5
CTGCAAC	5240	0.0	36.225124	4
GTCTGCA	93810	0.0	36.040066	2
CTGCATA	5750	0.0	36.004436	4
AGTCTGC	94980	0.0	35.95953	1
TCTGCAC	19450	0.0	35.822388	3
CTGCAAG	6655	0.0	35.77868	4
CTGCAAT	5370	0.0	35.761597	4
TGCACGA	1740	0.0	35.731125	5
CTGCAGT	8215	0.0	35.650623	4
GCACGGT	920	0.0	35.601067	6
TGCAACG	1315	0.0	35.600113	5