SRR2099271_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099271_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	228170
Sequences flagged as poor quality	0
Sequence length	43
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGTCTGCATGAATGCGGATGAAGGTGTCCTGCGCCAGGTCGGC	862	0.3777884910373844	No Hit
AATCTGCACGGTAGAGGGTATGCCGAGGCCCACCCCGACCAAC	808	0.3541219266336504	No Hit
AGCCTCCAAGCTACCGAACCTGCCGATGACTGGTGGCGCCGGT	584	0.255949511329272	No Hit
AGTCTGCAGGAAGGCCAGCGTCTGCGACACGCCGACATGCGCC	569	0.24937546566156815	No Hit
AGTCTGCATTCAAGGCAAGCTCATGGAGCTGCATGGGGAAGGC	561	0.24586930797212606	No Hit
AATCTGCACGGTAGGAGGGTATGCCGAGGCCCACCCCGACCAA	371	0.16259806284787656	No Hit
AGTCTGGTCCAACGATCGGTCGCTGGGTGGAAGCGGGCGAAGC	336	0.14725862295656747	No Hit
AGTCTGCAGGTAAGAGGGATGGCTGGTGACAGAGGGAAGGACT	320	0.1402463075776833	No Hit
AGTCTGCAGTTTGCATAGTAATATTGAGTAATTCATTGGCTAA	289	0.12665994653109522	No Hit
AGTCTGCAAAACTGGGGCTGGAGAGATGGCTCAGCGGTTAAGA	281	0.12315378884165315	No Hit
AGTCTGCATGAATGTGTCCTGCGCCAGGTCGGCCGCGTCGCAG	277	0.1214007099969321	No Hit
AGTCTGCAGGTAAGGAGGGATGGCTGGTGACAGAGGGAAGGAC	268	0.11745628259630977	No Hit
AGTCTGCATGACAGCCCCGAGCACCTCAGCGAGCTAATCAGGT	252	0.1104439672174256	No Hit
AGTCTGGTCCAACGGATCGGTCGCTGGGTGGAAGCGGGCGAAG	244	0.10693780952798351	No Hit
AGTCTGCAAGATGGGTAGGAGGACCACATGAGCCCAGGAAGTC	231	0.10124030328264014	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCGTA	45	2.6011548E-9	37.0	7
TTAGGCG	20	0.001838846	37.0	34
TCGCAGT	20	0.001838846	37.0	11
ACGCCTC	20	0.001838846	37.0	8
CAACGCG	20	0.001838846	37.0	7
TCCGACC	20	0.001838846	37.0	26
GCAACGG	50	1.7826096E-10	37.0	6
CATGACG	40	3.810237E-8	37.0	7
GGCAATT	20	0.001838846	37.0	11
ACCGAAC	55	1.2732926E-11	37.0	13
GCAAACG	30	8.2827955E-6	37.0	6
GCACGGT	305	0.0	37.0	6
GCACGCG	95	0.0	37.0	6
GCGCCGC	20	0.001838846	37.0	31
GTTAGAT	20	0.001838846	37.0	10
CACGAAG	80	0.0	37.0	7
ACGGGCA	25	1.2305264E-4	37.0	8
CATTATC	25	1.2305264E-4	37.0	7
CATTACG	20	0.001838846	37.0	7
TGCATAA	250	0.0	37.0	5