SRR2099270_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099270_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	397458
Sequences flagged as poor quality	0
Sequence length	43
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCCACCAGGACGCGGCGACTTCTCGCGTGGTGCGCGCCCGACG	3186	0.8015941307006024	No Hit
GTCACTAGGCGCGGACCCGTTCGTCCGGCACCTGGACGCTGGT	2099	0.528106114356737	No Hit
GTCACTAGGGGCAGGGCCAGGGCTGGTTTCTAGGGAGGTAGGT	1977	0.4974110472049877	No Hit
GTCACTAGCCGGAGGCATGGACTAGATGAGTCCTCCAAGGTAC	1885	0.4742639473856357	No Hit
ATCATTAGTCGAGGTGCGCCGTCCTCAAGGAGGTGCGCGGGTG	1510	0.3799143557306684	No Hit
GTCACTAGAGCATCAGCCTGGCCAAGATGGTGAAACCCCGTCT	1147	0.28858395100866	No Hit
GTTACGAGCGCGCGCCGGAATGGATGCGGCCGGTGATGATGCG	1045	0.2629208620785089	No Hit
GTCACTTGAGCTGAGCATTACCACAGCTCTGCCTTAAAAGAAA	833	0.2095818929295674	No Hit
GTCACTAGGGAGAACTGATGAACCGGCCGAACTGCGGGCTGTA	747	0.1879443865766949	No Hit
GTCACTATGGGTGGGCTAACGCTCTTGGTAATCATCAGCGTGA	717	0.1803964192442975	No Hit
GCCACCAGGACGCGGGCGACTTCTCGCGTGGTGCGCGCCCGAC	702	0.1766224355780988	No Hit
GTCACTAGGGACAAAGTAGACCATGTCTAGTTTTGTCTGTGGT	639	0.1607717041800643	No Hit
GTCACTAGCCCGTCATTGGAGCCCATGGCCAGGACTGACTTTG	573	0.14416617604879006	No Hit
GTCACTAGGCGCGGGACCCGTTCGTCCGGCACCTGGACGCTGG	504	0.12680585118427606	No Hit
GGCACAAGAGTCCCCGCGCTCCTCCTCATCGGCCACGGCTTGG	449	0.11296791107488087	No Hit
GTCACTAGCCGGAATCCTGCAGTTTTCTCCTTTTTTTGCTTTC	425	0.10692953720896295	No Hit
GTCACTAGGGGCAGGGGCCAGGGCTGGTTTCTAGGGAGGTAGG	405	0.1018975589873647	No Hit
GTCACTAGTGCGGAGGAGGACCAGAGCCTGTCTCAGGGAATTG	399	0.10038796552088523	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGGTTA	35	5.587408E-7	37.026577	8
GCGGTAT	20	0.0018340072	37.026577	8
GCGCGTA	60	0.0	37.026577	8
GGGACGA	25	1.2269749E-4	37.026577	8
GAGCGTA	25	1.2269749E-4	37.026577	8
GCTTACG	25	1.2269749E-4	37.026577	8
GTCGTAG	70	0.0	37.026577	8
GCGTACG	20	0.0018340072	37.026577	8
AGCGTTC	35	5.5929377E-7	37.021915	7
TCCGCGG	20	0.0018351421	37.021915	9
TAGACGG	115	0.0	37.021915	6
TAGCGCG	295	0.0	37.021915	6
TAGCCCG	85	0.0	37.021915	6
AGTGCGT	55	1.2732926E-11	37.021915	7
TTAGTCG	245	0.0	37.021915	5
TTTGCGA	20	0.0018351421	37.021915	9
TAGGCGG	150	0.0	37.021915	6
CGCGTAC	40	3.8025973E-8	37.021915	9
ATCGCGT	40	3.8025973E-8	37.021915	9
TAGTCGC	80	0.0	37.021915	6