Basic Statistics
Measure | Value |
---|---|
Filename | SRR2099270_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 397458 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCCACCAGGACGCGGCGACTTCTCGCGTGGTGCGCGCCCGACG | 3186 | 0.8015941307006024 | No Hit |
GTCACTAGGCGCGGACCCGTTCGTCCGGCACCTGGACGCTGGT | 2099 | 0.528106114356737 | No Hit |
GTCACTAGGGGCAGGGCCAGGGCTGGTTTCTAGGGAGGTAGGT | 1977 | 0.4974110472049877 | No Hit |
GTCACTAGCCGGAGGCATGGACTAGATGAGTCCTCCAAGGTAC | 1885 | 0.4742639473856357 | No Hit |
ATCATTAGTCGAGGTGCGCCGTCCTCAAGGAGGTGCGCGGGTG | 1510 | 0.3799143557306684 | No Hit |
GTCACTAGAGCATCAGCCTGGCCAAGATGGTGAAACCCCGTCT | 1147 | 0.28858395100866 | No Hit |
GTTACGAGCGCGCGCCGGAATGGATGCGGCCGGTGATGATGCG | 1045 | 0.2629208620785089 | No Hit |
GTCACTTGAGCTGAGCATTACCACAGCTCTGCCTTAAAAGAAA | 833 | 0.2095818929295674 | No Hit |
GTCACTAGGGAGAACTGATGAACCGGCCGAACTGCGGGCTGTA | 747 | 0.1879443865766949 | No Hit |
GTCACTATGGGTGGGCTAACGCTCTTGGTAATCATCAGCGTGA | 717 | 0.1803964192442975 | No Hit |
GCCACCAGGACGCGGGCGACTTCTCGCGTGGTGCGCGCCCGAC | 702 | 0.1766224355780988 | No Hit |
GTCACTAGGGACAAAGTAGACCATGTCTAGTTTTGTCTGTGGT | 639 | 0.1607717041800643 | No Hit |
GTCACTAGCCCGTCATTGGAGCCCATGGCCAGGACTGACTTTG | 573 | 0.14416617604879006 | No Hit |
GTCACTAGGCGCGGGACCCGTTCGTCCGGCACCTGGACGCTGG | 504 | 0.12680585118427606 | No Hit |
GGCACAAGAGTCCCCGCGCTCCTCCTCATCGGCCACGGCTTGG | 449 | 0.11296791107488087 | No Hit |
GTCACTAGCCGGAATCCTGCAGTTTTCTCCTTTTTTTGCTTTC | 425 | 0.10692953720896295 | No Hit |
GTCACTAGGGGCAGGGGCCAGGGCTGGTTTCTAGGGAGGTAGG | 405 | 0.1018975589873647 | No Hit |
GTCACTAGTGCGGAGGAGGACCAGAGCCTGTCTCAGGGAATTG | 399 | 0.10038796552088523 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGGTTA | 35 | 5.587408E-7 | 37.026577 | 8 |
GCGGTAT | 20 | 0.0018340072 | 37.026577 | 8 |
GCGCGTA | 60 | 0.0 | 37.026577 | 8 |
GGGACGA | 25 | 1.2269749E-4 | 37.026577 | 8 |
GAGCGTA | 25 | 1.2269749E-4 | 37.026577 | 8 |
GCTTACG | 25 | 1.2269749E-4 | 37.026577 | 8 |
GTCGTAG | 70 | 0.0 | 37.026577 | 8 |
GCGTACG | 20 | 0.0018340072 | 37.026577 | 8 |
AGCGTTC | 35 | 5.5929377E-7 | 37.021915 | 7 |
TCCGCGG | 20 | 0.0018351421 | 37.021915 | 9 |
TAGACGG | 115 | 0.0 | 37.021915 | 6 |
TAGCGCG | 295 | 0.0 | 37.021915 | 6 |
TAGCCCG | 85 | 0.0 | 37.021915 | 6 |
AGTGCGT | 55 | 1.2732926E-11 | 37.021915 | 7 |
TTAGTCG | 245 | 0.0 | 37.021915 | 5 |
TTTGCGA | 20 | 0.0018351421 | 37.021915 | 9 |
TAGGCGG | 150 | 0.0 | 37.021915 | 6 |
CGCGTAC | 40 | 3.8025973E-8 | 37.021915 | 9 |
ATCGCGT | 40 | 3.8025973E-8 | 37.021915 | 9 |
TAGTCGC | 80 | 0.0 | 37.021915 | 6 |