FastQCFastQC Report
Thu 26 May 2016
SRR2099270_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2099270_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397458
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCACCAGGACGCGGCGACTTCTCGCGTGGTGCGCGCCCGACG31860.8015941307006024No Hit
GTCACTAGGCGCGGACCCGTTCGTCCGGCACCTGGACGCTGGT20990.528106114356737No Hit
GTCACTAGGGGCAGGGCCAGGGCTGGTTTCTAGGGAGGTAGGT19770.4974110472049877No Hit
GTCACTAGCCGGAGGCATGGACTAGATGAGTCCTCCAAGGTAC18850.4742639473856357No Hit
ATCATTAGTCGAGGTGCGCCGTCCTCAAGGAGGTGCGCGGGTG15100.3799143557306684No Hit
GTCACTAGAGCATCAGCCTGGCCAAGATGGTGAAACCCCGTCT11470.28858395100866No Hit
GTTACGAGCGCGCGCCGGAATGGATGCGGCCGGTGATGATGCG10450.2629208620785089No Hit
GTCACTTGAGCTGAGCATTACCACAGCTCTGCCTTAAAAGAAA8330.2095818929295674No Hit
GTCACTAGGGAGAACTGATGAACCGGCCGAACTGCGGGCTGTA7470.1879443865766949No Hit
GTCACTATGGGTGGGCTAACGCTCTTGGTAATCATCAGCGTGA7170.1803964192442975No Hit
GCCACCAGGACGCGGGCGACTTCTCGCGTGGTGCGCGCCCGAC7020.1766224355780988No Hit
GTCACTAGGGACAAAGTAGACCATGTCTAGTTTTGTCTGTGGT6390.1607717041800643No Hit
GTCACTAGCCCGTCATTGGAGCCCATGGCCAGGACTGACTTTG5730.14416617604879006No Hit
GTCACTAGGCGCGGGACCCGTTCGTCCGGCACCTGGACGCTGG5040.12680585118427606No Hit
GGCACAAGAGTCCCCGCGCTCCTCCTCATCGGCCACGGCTTGG4490.11296791107488087No Hit
GTCACTAGCCGGAATCCTGCAGTTTTCTCCTTTTTTTGCTTTC4250.10692953720896295No Hit
GTCACTAGGGGCAGGGGCCAGGGCTGGTTTCTAGGGAGGTAGG4050.1018975589873647No Hit
GTCACTAGTGCGGAGGAGGACCAGAGCCTGTCTCAGGGAATTG3990.10038796552088523No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGTTA355.587408E-737.0265778
GCGGTAT200.001834007237.0265778
GCGCGTA600.037.0265778
GGGACGA251.2269749E-437.0265778
GAGCGTA251.2269749E-437.0265778
GCTTACG251.2269749E-437.0265778
GTCGTAG700.037.0265778
GCGTACG200.001834007237.0265778
AGCGTTC355.5929377E-737.0219157
TCCGCGG200.001835142137.0219159
TAGACGG1150.037.0219156
TAGCGCG2950.037.0219156
TAGCCCG850.037.0219156
AGTGCGT551.2732926E-1137.0219157
TTAGTCG2450.037.0219155
TTTGCGA200.001835142137.0219159
TAGGCGG1500.037.0219156
CGCGTAC403.8025973E-837.0219159
ATCGCGT403.8025973E-837.0219159
TAGTCGC800.037.0219156