SRR2099267_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099267_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	483791
Sequences flagged as poor quality	0
Sequence length	43
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCAAGCGAAGCTACGCCGACGGCTTTTAGCATTGCTTCTTTTT	1800	0.3720614893621419	No Hit
GCATTCGTTGCTTTGCAAGCAGATCGTCGGACTGTAGAACTCT	559	0.11554576252968742	Illumina DpnII expression Sequencing Primer (100% over 22bp)
GCATTCGACGAATACGACTCACTATAGCGAGTCGTATTACCGG	513	0.10603752446821045	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGCGA	20	0.0018370706	37.015617	11
TCGGGCG	25	1.2295105E-4	37.015617	11
GCGTTAT	25	1.2295105E-4	37.015617	9
GCGTTAA	20	0.0018370706	37.015617	9
CGTTAAT	25	1.2295105E-4	37.015617	10
CGCCGCA	20	0.0018370706	37.015617	9
GCGTCGG	20	0.0018370706	37.015617	9
CGCCATA	20	0.0018370706	37.015617	11
ATCCGTT	30	8.2839E-6	37.01179	8
ACCGTAG	30	8.2839E-6	37.01179	8
AGCGTTA	65	0.0	37.011787	8
ACGCATA	25	1.2302592E-4	37.011787	8
ACTAGCG	20	0.001838004	37.011787	8
ACGTGCG	25	1.2302592E-4	37.011787	8
ACGCTTA	25	1.2302592E-4	37.011787	8
ACGTACG	20	0.001838004	37.011787	8
ATAGTCG	20	0.001838004	37.011787	8
ATCGCTA	25	1.2302592E-4	37.011787	8
GATACGC	35	5.617385E-7	37.00414	7
GATACGT	30	8.295663E-6	37.004135	7