Basic Statistics
Measure | Value |
---|---|
Filename | SRR2099262_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 377701 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGTACCCACCCGATCCCGGCATCGGTACTTTTTTTTTTTT | 1452 | 0.38443107113828134 | No Hit |
ATCGGTACTGAAAGGGATGGGGGGAGGGGGGAGGGATAGCATT | 1297 | 0.3433933190539607 | No Hit |
ATCGGTACAGCGAAACAAAAGCAGACTCTTTACAGAAACTGGA | 860 | 0.22769333414526305 | No Hit |
ATCGGTACGCCACGGATCGGTACTTTTTTTTTTTTTTTTTTTT | 831 | 0.2200153031101321 | No Hit |
ATCGGTGCAGCGCGGAAGGTCAAGATCAACCGCAAAAGCATCC | 828 | 0.21922102403753232 | No Hit |
ACCGGTACGACCAGAACTCTGCGATCTTGCCGCTGGCCAGGTA | 634 | 0.16785764400941486 | No Hit |
ATCGGTGGGCAGGGGCCAGCCTCCTTAGCGACGACGCCGAACT | 556 | 0.14720638812182124 | No Hit |
ATCGGTACCAACGGGGTTATCTGACCCACTGCTGCATGTGGGC | 469 | 0.12417229501642835 | No Hit |
ATCGGCACGCACCCAACGGCAACGTCTGGGACGCCACCCTGCG | 425 | 0.1125228686182986 | No Hit |
ATTGGTACTAGCCAAGGAGGGTGAGGTGGGCTCCTCCGCGATG | 405 | 0.1072276748009669 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTTCGCG | 25 | 1.2242336E-4 | 37.040054 | 8 |
TACCCGA | 85 | 0.0 | 37.040054 | 6 |
ACACGCG | 45 | 2.582965E-9 | 37.040054 | 7 |
TCCGCGG | 25 | 1.2242336E-4 | 37.040054 | 9 |
TACTTCG | 210 | 0.0 | 37.040054 | 6 |
GTACACG | 280 | 0.0 | 37.040054 | 5 |
TACGGTT | 205 | 0.0 | 37.040054 | 6 |
TACGGCG | 180 | 0.0 | 37.040054 | 6 |
TACGCCG | 170 | 0.0 | 37.040054 | 6 |
ACGGCTG | 50 | 1.7644197E-10 | 37.040054 | 7 |
ACTACGC | 85 | 0.0 | 37.040054 | 7 |
ACGCTTA | 25 | 1.2242336E-4 | 37.040054 | 7 |
ACTGTCG | 25 | 1.2242336E-4 | 37.040054 | 7 |
CTCGCGT | 25 | 1.2242336E-4 | 37.040054 | 9 |
ACGTCGT | 35 | 5.570528E-7 | 37.040054 | 7 |
ACGTCGC | 105 | 0.0 | 37.040054 | 7 |
ACGTCCC | 25 | 1.2242336E-4 | 37.040054 | 7 |
ACCGTTC | 35 | 5.570528E-7 | 37.040054 | 7 |
ACTCCGC | 90 | 0.0 | 37.040054 | 7 |
GACTCGG | 35 | 5.570528E-7 | 37.040054 | 9 |