FastQCFastQC Report
Thu 26 May 2016
SRR2099262_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2099262_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences377701
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGTACCCACCCGATCCCGGCATCGGTACTTTTTTTTTTTT14520.38443107113828134No Hit
ATCGGTACTGAAAGGGATGGGGGGAGGGGGGAGGGATAGCATT12970.3433933190539607No Hit
ATCGGTACAGCGAAACAAAAGCAGACTCTTTACAGAAACTGGA8600.22769333414526305No Hit
ATCGGTACGCCACGGATCGGTACTTTTTTTTTTTTTTTTTTTT8310.2200153031101321No Hit
ATCGGTGCAGCGCGGAAGGTCAAGATCAACCGCAAAAGCATCC8280.21922102403753232No Hit
ACCGGTACGACCAGAACTCTGCGATCTTGCCGCTGGCCAGGTA6340.16785764400941486No Hit
ATCGGTGGGCAGGGGCCAGCCTCCTTAGCGACGACGCCGAACT5560.14720638812182124No Hit
ATCGGTACCAACGGGGTTATCTGACCCACTGCTGCATGTGGGC4690.12417229501642835No Hit
ATCGGCACGCACCCAACGGCAACGTCTGGGACGCCACCCTGCG4250.1125228686182986No Hit
ATTGGTACTAGCCAAGGAGGGTGAGGTGGGCTCCTCCGCGATG4050.1072276748009669No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCGCG251.2242336E-437.0400548
TACCCGA850.037.0400546
ACACGCG452.582965E-937.0400547
TCCGCGG251.2242336E-437.0400549
TACTTCG2100.037.0400546
GTACACG2800.037.0400545
TACGGTT2050.037.0400546
TACGGCG1800.037.0400546
TACGCCG1700.037.0400546
ACGGCTG501.7644197E-1037.0400547
ACTACGC850.037.0400547
ACGCTTA251.2242336E-437.0400547
ACTGTCG251.2242336E-437.0400547
CTCGCGT251.2242336E-437.0400549
ACGTCGT355.570528E-737.0400547
ACGTCGC1050.037.0400547
ACGTCCC251.2242336E-437.0400547
ACCGTTC355.570528E-737.0400547
ACTCCGC900.037.0400547
GACTCGG355.570528E-737.0400549