SRR2099242_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099242_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1391325
Sequences flagged as poor quality	0
Sequence length	47
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGCTTCGTCCATGGCCTGGTCACAGCGGGCTCGGGCGTGGCCATCGG	6680	0.48011787325031896	No Hit
GACTACGTTATCGCACCCTTGGCTCCTCGAGCCAGCGTCGAGTTCTT	6232	0.4479183512119742	No Hit
GACTACGTGCAGAAGGGTGATGATCGGAGTGTCGTCACCCGGGAAGT	2025	0.1455447145706431	No Hit
GACTACGTCACCTGCGTATCTCTATACACGTGGCAGTGACTACGTTT	1664	0.1195982247138519	No Hit
GACTACGTGACCACTGAGCCAACGTCACATTAGGGTCCGCAAGCAGG	1536	0.11039836127432483	No Hit
GACTACGTTGAGGCCCTTCCGACGATCTCGAAGATGAGGCCAGTGAC	1450	0.10421720302589259	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTAGCG	450	41.00892	6
CTACGTG	37665	40.920345	3
CTACGTA	32250	40.75949	3
TACGTGC	8910	40.709755	4
CTACGTC	29750	40.697304	3
TACGTGG	11680	40.587593	4
TACGTGA	10600	40.505978	4
TACGTCC	6900	40.50374	4
TACGTTA	8925	40.480515	4
TACGTCA	8360	40.46933	4
TACGTGT	6965	40.272938	4
ACGTATG	1895	40.2515	5
ACGTCGC	2010	40.19282	5
TACGTAC	6530	40.19251	4
TACGTAG	10080	40.113884	4
TACGTTG	8220	40.061024	4
ACGTTAT	3630	40.048656	5
TACGTAA	9050	40.01202	4
TACGTCG	8570	39.884407	4
TACGTAT	7230	39.846146	4