SRR2099230_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099230_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2427806
Sequences flagged as poor quality	0
Sequence length	42
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATGCTCCGTCTTTTAAATCCTGGTTTGACAAGCTACTTCTT	8979	0.3698400943073705	No Hit
GATGCTCTTTACTATGCCCCTGTACAGGGGAACGTCAGGGCC	4450	0.1832930637785721	No Hit
GGTGCCCAAGGAAAAATGGCCTAGTTGGCCATCAGTGGAAAG	3431	0.14132101164590583	No Hit
GATGCGCCAGGGGGTGGAATCAGTGGATGCTGCAAGGAAGTC	3174	0.1307353223445366	No Hit
GATGCTTAACGAGGAGGAAGGGCTGAAGAGGTGGTTCAGCTG	2884	0.11879038110952853	No Hit
GATGCTCAGCTTGGTCTTGCAAACTTTATATGCCCTAGTACA	2775	0.11430073078326686	No Hit
GATGCTCATAACGTCCTATGAAGGCTCTAAGCCCCAGTGTAG	2449	0.1008729692570164	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTACCG	25	1.4409132E-4	36.037926	8
GCTCACG	14160	0.0	35.93242	4
TGCTCAA	37555	0.0	35.764072	3
TGCTCAC	49795	0.0	35.732418	3
TGCTCAG	63020	0.0	35.71825	3
TCACGCG	1820	0.0	35.639698	6
TGCTCCG	3310	0.0	35.59728	3
GATGCTC	206715	0.0	35.53873	1
GCTCCGT	2165	0.0	35.534885	4
CTCACGA	2130	0.0	35.527416	5
CTCACGC	4290	0.0	35.488968	5
ATGCTCA	194185	0.0	35.47838	2
CTCACGG	4000	0.0	35.449383	5
GCTCACC	13575	0.0	35.423683	4
GCTCAAT	9600	0.0	35.302265	4
GCTCAAG	12870	0.0	35.264248	4
TCACCCG	1600	0.0	35.247414	6
CTCACGT	4255	0.0	35.23041	5
GCTCATA	8400	0.0	35.154804	4
TCACACG	1325	0.0	35.08381	6