SRR2099228_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099228_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1017783
Sequences flagged as poor quality	0
Sequence length	42
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TGCTACAGGCGATTCGAAGCGGGATCTCGCCCACCATTTGGG	4840	0.4755434115130632	No Hit
TGCTTCAACTCCAGAAGCAGGCTCCATGCACCAGGAGCCCGA	4489	0.44105668890126876	No Hit
TGCAACCGAGCGGCGGCGCGCCGGTGGGCGCGGACCGTCGGG	3532	0.34702878707936763	No Hit
TGGTCCAGGGCGGCATCTGGATACCGGCGTACCTGGAGCACG	2049	0.20131992772526164	No Hit
TGCTACAGCGTCCTACAGTCCGACGATCGAGTTGCTACAGTT	1819	0.1787217904012938	No Hit
TGCTACAGCCCACGACGATCTACTTGCTACAGTTTTTTTTTT	1769	0.17380915185260512	No Hit
GGCGACAGGCATGGCCGATGGCCGCACGCTGTGGCTGCTGTC	1718	0.16879826053294267	No Hit
TGCAGCAGTGAGGGGCAGGTGCGCAACTTCTCCATTCCGGGC	1348	0.13244473527264652	No Hit
TGCTGCAGCTTTGGAGAAGATACAGCGCATCGAGGCTGTCAG	1157	0.11367845601665581	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACTCG	105	0.0	36.04663	9
TTACGAA	20	0.00209365	36.04663	9
ACTCCGC	30	9.943407E-6	36.044857	8
GACGATA	20	0.0020941559	36.044857	8
GCCACGA	20	0.0020941559	36.044857	8
ATAGTCG	45	3.3833203E-9	36.043083	5
TAACGGA	20	0.002108874	35.99346	11
CCGGTCG	40	4.915455E-8	35.9687	14
CTACAGG	25025	0.0	35.938725	3
CTACAGC	19600	0.0	35.86485	3
ACAGCGG	1955	0.0	35.582172	5
TACAGGT	7130	0.0	35.508797	4
CGATTCG	610	0.0	35.403404	10
ACAGGCG	2705	0.0	35.37685	5
CTACAGA	14335	0.0	35.36073	3
TACAGCC	4610	0.0	35.17959	4
TACAGGC	7325	0.0	35.178524	4
ACAGGGG	2520	0.0	35.1134	5
TACAGCG	6745	0.0	35.024334	4
TGCTACA	80265	0.0	35.004353	1