SRR2099217_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099217_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	66702
Sequences flagged as poor quality	0
Sequence length	43
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TGCACGTATAAAAGAGTCGTATTACCGGCCGACGATCTAAAAT	134	0.2008935264309916	No Hit
TGCACGTAGCGCAGTTCCGAAGCCATCACGTGGTCACCCTGCT	105	0.15741656921831432	No Hit
TGCACGTACATCAGATTAGTTTGAAAGGTCATCCCTACAAGAA	104	0.15591736379718749	No Hit
TGGACGTCCGAGCCAGCACCGACTGCCATTCTCCCTCGCGGCT	102	0.15291895295493388	No Hit
TGCACGTATTCCAAGTTTGTGCGATGATGATTCGTGAGCCTTG	94	0.14092530958591945	No Hit
TGCACGTAGTTTAGTTTGGGCAGACAGTTACAAACTTGGCTGT	86	0.12893166621690505	No Hit
TGCACGTATCTGTGACTCAGGTCCTTCTGCTCTGGCATGATCT	78	0.11693802284789062	No Hit
TGCACGTAGTTTCGCTTCAACCATCACATCTGCACGGCCACCC	75	0.1124404065845102	No Hit
TGCACGTAAGTCTAGTCCGACGATCTCTTGTGCACGTATTTTT	74	0.11094120116338341	No Hit
TGCACGTATATGGCCTTCACCCACTCTGTGCTCTCCACAGAGG	73	0.1094419957422566	No Hit
TGCACGTAGTTGCGGTGCAGCCGTGGCACTGTTGGAAGACCGG	69	0.10344517405774939	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAGGT	165	0.0	37.000004	5
CGTAACT	105	0.0	37.000004	5
ACGTACC	385	0.0	37.000004	4
TGTTTCC	20	0.0018295351	37.0	13
CGTGGTC	20	0.0018295351	37.0	29
GTACCTT	45	2.5411282E-9	37.0	6
GTACCTC	30	8.1951075E-6	37.0	6
GTACCTA	35	5.526017E-7	37.0	6
GTACCGT	30	8.1951075E-6	37.0	6
GTACCGG	25	1.2212012E-4	37.0	6
GTACCCG	40	3.7414793E-8	37.0	6
GTACCAT	35	5.526017E-7	37.0	6
ACACGTA	20	0.0018295351	37.0	2
AATTTCG	20	0.0018295351	37.0	8
GTACATG	35	5.526017E-7	37.0	6
CGTATGA	55	1.2732926E-11	37.0	5
AGTTTCG	25	1.2212012E-4	37.0	8
CGTATCT	115	0.0	37.0	5
GTATTCG	25	1.2212012E-4	37.0	6
GTATTCC	45	2.5411282E-9	37.0	6