Basic Statistics
Measure | Value |
---|---|
Filename | SRR2099217_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 66702 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TGCACGTATAAAAGAGTCGTATTACCGGCCGACGATCTAAAAT | 134 | 0.2008935264309916 | No Hit |
TGCACGTAGCGCAGTTCCGAAGCCATCACGTGGTCACCCTGCT | 105 | 0.15741656921831432 | No Hit |
TGCACGTACATCAGATTAGTTTGAAAGGTCATCCCTACAAGAA | 104 | 0.15591736379718749 | No Hit |
TGGACGTCCGAGCCAGCACCGACTGCCATTCTCCCTCGCGGCT | 102 | 0.15291895295493388 | No Hit |
TGCACGTATTCCAAGTTTGTGCGATGATGATTCGTGAGCCTTG | 94 | 0.14092530958591945 | No Hit |
TGCACGTAGTTTAGTTTGGGCAGACAGTTACAAACTTGGCTGT | 86 | 0.12893166621690505 | No Hit |
TGCACGTATCTGTGACTCAGGTCCTTCTGCTCTGGCATGATCT | 78 | 0.11693802284789062 | No Hit |
TGCACGTAGTTTCGCTTCAACCATCACATCTGCACGGCCACCC | 75 | 0.1124404065845102 | No Hit |
TGCACGTAAGTCTAGTCCGACGATCTCTTGTGCACGTATTTTT | 74 | 0.11094120116338341 | No Hit |
TGCACGTATATGGCCTTCACCCACTCTGTGCTCTCCACAGAGG | 73 | 0.1094419957422566 | No Hit |
TGCACGTAGTTGCGGTGCAGCCGTGGCACTGTTGGAAGACCGG | 69 | 0.10344517405774939 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTAGGT | 165 | 0.0 | 37.000004 | 5 |
CGTAACT | 105 | 0.0 | 37.000004 | 5 |
ACGTACC | 385 | 0.0 | 37.000004 | 4 |
TGTTTCC | 20 | 0.0018295351 | 37.0 | 13 |
CGTGGTC | 20 | 0.0018295351 | 37.0 | 29 |
GTACCTT | 45 | 2.5411282E-9 | 37.0 | 6 |
GTACCTC | 30 | 8.1951075E-6 | 37.0 | 6 |
GTACCTA | 35 | 5.526017E-7 | 37.0 | 6 |
GTACCGT | 30 | 8.1951075E-6 | 37.0 | 6 |
GTACCGG | 25 | 1.2212012E-4 | 37.0 | 6 |
GTACCCG | 40 | 3.7414793E-8 | 37.0 | 6 |
GTACCAT | 35 | 5.526017E-7 | 37.0 | 6 |
ACACGTA | 20 | 0.0018295351 | 37.0 | 2 |
AATTTCG | 20 | 0.0018295351 | 37.0 | 8 |
GTACATG | 35 | 5.526017E-7 | 37.0 | 6 |
CGTATGA | 55 | 1.2732926E-11 | 37.0 | 5 |
AGTTTCG | 25 | 1.2212012E-4 | 37.0 | 8 |
CGTATCT | 115 | 0.0 | 37.0 | 5 |
GTATTCG | 25 | 1.2212012E-4 | 37.0 | 6 |
GTATTCC | 45 | 2.5411282E-9 | 37.0 | 6 |