SRR2099211_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099211_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	78457
Sequences flagged as poor quality	0
Sequence length	43
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGTCTGCAGCAGCAATTCGACAACGAAAGTCATATCGAAGAAA	217	0.27658462597346317	No Hit
AGTCTGCAATATGATTCCGCCTTTGATAGCTCGAAAGGGGAGC	210	0.2676625412646418	No Hit
AGTCTGCACACCGGATTTGGCAGCCCAGGCAGAAGCTGCCAAG	114	0.14530252240080554	No Hit
AGTCTGCAGCGACCTTTCACAATGTTAAAATACTAAATATTTG	103	0.13128210357265763	No Hit
AGTCTGCATGGTCATTTCTGTCACTTTAAAAATAAAGTACAGT	83	0.1057904329760251	No Hit
AGTCTGCACCACAACCAAAAATAATGAACTTAAAACAAAAATA	81	0.10324126591636183	No Hit
AGTCTGCAACGTGGATTCTTTCCCACCTAAGTGAGGTTCTGGA	79	0.10069209885669858	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCATAAG	35	5.5097007E-7	37.02808	6
GCATAAC	30	8.170846E-6	37.02808	6
CATGGTC	25	1.217708E-4	37.02808	7
AAGTATG	20	0.0018246787	37.02808	8
CAGCGTG	20	0.0018246787	37.02808	7
GCAAGGA	25	1.217708E-4	37.02808	6
GCAAGAT	35	5.5097007E-7	37.02808	6
ATAGGTG	30	8.170846E-6	37.02808	8
CACGGTA	20	0.0018246787	37.02808	7
GCAACGG	50	1.72804E-10	37.02808	6
GCAACCC	25	1.217708E-4	37.02808	6
GCAACAT	35	5.5097007E-7	37.02808	6
CATGAGT	20	0.0018246787	37.02808	7
CGGTTAG	20	0.0018246787	37.02808	13
TCTTATA	20	0.0018246787	37.02808	17
GCAAATC	20	0.0018246787	37.02808	6
GCAGTCG	45	2.5356712E-9	37.02808	6
ATAGCCG	20	0.0018246787	37.02808	8
GCACGTT	40	3.7307473E-8	37.02808	6
GCACGTG	35	5.5097007E-7	37.02808	6