SRR2099209_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099209_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	37065
Sequences flagged as poor quality	0
Sequence length	43
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTCACTAGTTGACGGCGCTGATCGTGCAGCTGGAGCTGCCGAT	117	0.31566167543504653	No Hit
GTCACTAGCTTCGAGTACGAGGAGGGGAGACTGCTGGTGATTT	96	0.2590044516390126	No Hit
GTCACTAGGTACTATTGAGGCCGTGCATTCTTTCGATCCTGGA	83	0.2239309321462296	No Hit
GTCACTAGCACCCAGTCCGACGATCGTTTCGTCGGACTGTAGA	79	0.21313907999460407	No Hit
GTCACTAGGAGCTTACAGGAGAAGGGCCGGCAGAGGAGCGTCG	69	0.18615944961554026	No Hit
GTCACTAGCGCGCGATTAAGAAGATGTAGCCCTCTGGATGGAT	63	0.16997167138810199	No Hit
GTCACTAGAAGTCGGTTCTGAGAGGCCTGGGCTGATTAGGACC	59	0.15917981923647648	No Hit
GTCACTAGGGCGAAGTCCGACGAACACTAGGTCACTAGTTTTC	57	0.1537838931606637	No Hit
GTCACTAGAGATACTTACGGTGATGCTCACCGTAAGTGTTTAA	56	0.1510859301227573	No Hit
GTCACTAGATCAGGTTCCGGCGACATGGCTAAACGCACCAAGA	55	0.14838796708485094	No Hit
GTCACTAGACTTTGTTTCATGTGCTTACACCACATGAAACACT	48	0.1295022258195063	No Hit
GTCACTAGTATTCGGTCCGACGATCATTTCGTCGGACTGTAGA	47	0.1268042627815999	No Hit
GTCACTAGTTCGTGTTTCCTCTAAGTGTTACCATTATGGTGCT	45	0.12140833670578711	No Hit
GTCACTAGCGCATAATTGGCTGGGCATGGTGGCAGGTGCCTGT	43	0.11601241062997437	No Hit
GTCACTAGGTTTGGTTTCGACCCCAGAGCTCTGTGTGCTTCCA	43	0.11601241062997437	No Hit
GTCACTAGGTTTGGGTTCGGCCAGGGTTCCCGCTCTTGCCGCG	42	0.11331444759206798	No Hit
GTCACTAGAGGTCGGTCCGACGATCGTGGGACTGTAGAACTCT	42	0.11331444759206798	Illumina DpnII expression Sequencing Primer (95% over 22bp)
GTCACTAGTCAGGCTTTCCAGGAGAAAAATCTCCTGGAAAGTA	38	0.10252259544044247	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGAAAT	20	0.0018190438	37.0	6
TAGCGGT	20	0.0018190438	37.0	6
TAGCGCC	20	0.0018190438	37.0	6
GGAGACT	55	1.0913936E-11	37.0	26
TAGGATT	35	5.4378324E-7	37.0	6
TAGTGTA	35	5.4378324E-7	37.0	6
TAGGAGG	40	3.6649E-8	37.0	6
TAGGAGC	40	3.6649E-8	37.0	6
AGCTTCG	55	1.0913936E-11	37.0	7
TAGTGGC	20	0.0018190438	37.0	6
TAGTGCG	25	1.21071804E-4	37.0	6
TCAGGTT	20	0.0018190438	37.0	10
AATTTCA	25	1.21071804E-4	37.0	13
CCTGTGG	20	0.0018190438	37.0	35
TTTCCAC	20	0.0018190438	37.0	15
GTTCCAG	20	0.0018190438	37.0	9
TAGCTTC	65	0.0	37.0	6
TTCGAGT	55	1.0913936E-11	37.0	10
GTTTCCA	25	1.21071804E-4	37.0	14
GTTTCAT	25	1.21071804E-4	37.0	14