SRR2099200_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099200_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1111564
Sequences flagged as poor quality	0
Sequence length	43
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCAACAGGCTGGCGCGGTGCCGCCCGCGCCGGTGATCGAGCGG	6859	0.6170584869607149	No Hit
GCTACAGTGCGATTTCGAAGCGGGATCTCGCCCACCATTTGGG	4799	0.43173402521132387	No Hit
TCGACCGCCCTGCGATGCGAAGACCGGCACGCGCTTCGGCCGC	1832	0.16481282229363312	No Hit
GCTACAGTCGTCTCTACAGTCCGACGATCGAGTTGCTACAGTT	1761	0.15842542579644536	No Hit
GCTACAGTCCCATCGACGATCTACTTGCTACAGTTTTTTTTTT	1741	0.15662615917751924	No Hit
GCGACAGCGCATGGGCCGATGGCCGCACGCTGTGGCTGCTGTC	1712	0.15401722258007636	No Hit
TCAACAATCAGTTTCTGATCTGGATGCCTGGAAATAGGCCAGC	1698	0.15275773594682807	No Hit
TCGAAACTCTATCCGCGCATGGAGCGCAGCCGCGCGCGAGCCG	1214	0.10921548376881583	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATAGCG	85	37.0315	3
TACAGTA	14005	36.50267	3
ACAGTGC	9260	36.498203	4
CGAAACT	315	36.378124	2
ACAGTCG	8270	36.34399	4
CAGTGCG	3445	36.28886	5
ACAGTCT	7565	36.23034	4
ACAGTCA	5200	36.18345	4
CAGTCGC	2845	36.130123	5
GCTACAG	76635	36.09585	1
TACAGTG	24610	36.01581	3
ACAGTAC	4890	36.01565	4
AGTAGCG	345	35.967846	6
ACAGTTC	8510	35.928337	4
AGTGGCG	640	35.88397	6
GACAGTC	8120	35.822964	3
AGTCGCT	595	35.79642	6
ACAGTAA	4025	35.795902	4
ACAGTTA	4395	35.731937	4
ACGGCAC	390	35.61363	4