SRR2099198_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099198_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	606910
Sequences flagged as poor quality	0
Sequence length	43
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CATGCCTGCTCACAGAAAGCAAGGCTGCTTTCTGCTCTTGCTT	4365	0.7192170173501837	No Hit
CATGCCGGTGCCAGGCCAGGGCGCGATCGTCACCGTCAGTTCG	3155	0.5198464352210377	No Hit
CATGTCAGACGGCGTTTGGCTGGGGTAGGTTGTCTGAAGGTTT	1890	0.3114135539042032	No Hit
AATGACAGCAGCGGGCCATCGGAGATGGTTCCGTCAAGGGCAA	1591	0.262147600138406	No Hit
CATGTCAGACGGCGGTTTGGCTGGGGTAGGTTGTCTGAAGGTT	1508	0.24847176681880345	No Hit
CTTGTAAGAATGGGAGACAAAAAGCAGTCACTCTGCAGTAAAA	1324	0.21815425680908207	No Hit
CATGTCAGATGGATCAACCCCTCAAGGGTTGGTGAAGAGATTC	1281	0.2110691865350711	No Hit
CATGGAAGGCTGCCACGCCGTTCTTGTAAGCGGTGACGTCGAT	1186	0.19541612430179103	No Hit
CATGTTCGATTGGGAACCTGATCCGGTCGCGTTCGAACAGCAT	1081	0.17811537130711308	No Hit
CATGCCGGTGCCAGGGCCAGGGCGCGATCGTCACCGTCAGTTC	1019	0.16789968858644608	No Hit
CATAGCAGCAGTAGCTAATGGACCGATTGATATCAGTGATGAT	1003	0.16526338336820948	No Hit
CATGTCAGATGCTCGGGGCGCGGGACATGTGGCGTACGGAAGA	932	0.15356477896228438	No Hit
CATGTCAGGAGTCCGCGTATCAACCCCTCAAGGGTTGATACGC	926	0.15257616450544562	No Hit
CATGACGGGTCGGGGCGCCCCAGCAGGGCAGGGTCGATGTGTT	842	0.13873556210970325	No Hit
CATGACAATCGTTGCGCCACCTCTTTGTGCCACGCGGCACCAA	798	0.1314857227595525	No Hit
CATGACGGGTCGGGGGCGCCCCAGCAGGGCAGGGTCGATGTGT	747	0.12308249987642318	No Hit
CATGCCAGAGAGACAACGGTGAGCAGCTGCTACTAGCTCTCGT	737	0.1214348091150253	No Hit
CATGTCAGTTTTCCAGTCCGACGATCTATGACATGTAAAAGAT	728	0.11995188742976719	No Hit
CATGTCAGCCAATGGCTCGAAAGGTTGAGATGTACTCCCTCCG	726	0.11962234927748759	No Hit
CATGTCAGTCCCGCGGGCGACGGCTGGCCCCTGTTCCAGCCGC	661	0.10891235932840124	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGGTGT	25	1.226209E-4	37.03442	9
TAGCGTC	20	0.0018328619	37.034416	9
TTATCGG	20	0.0018328619	37.034416	9
TTCCCGG	40	3.7969585E-8	37.034416	9
CGCGATT	35	5.5882447E-7	37.03136	7
AGGCGTA	35	5.5882447E-7	37.03136	7
GCTTCGC	20	0.001833605	37.03136	8
GAGCGTA	20	0.001833605	37.03136	8
GATATCG	110	0.0	37.03136	8
GCGATTA	30	8.2573715E-6	37.03136	8
AGTTAGC	20	0.001833605	37.03136	7
AGTAGCG	260	0.0	37.03136	7
TAACACG	20	0.0018403032	37.00388	13
CGTAATA	20	0.0018403032	37.00388	13
TCGCAGT	25	1.232776E-4	37.000824	11
CTATCGT	20	0.0018410486	37.000824	12
TCACACG	25	1.232776E-4	37.000824	10
CTGAACG	20	0.0018410486	37.000824	12
CGTTAGC	20	0.0018410486	37.000824	10
CCCGTAA	20	0.0018410486	37.000824	11