SRR2099192_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099192_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	939950
Sequences flagged as poor quality	0
Sequence length	47
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGCTAGCTAGAAATGGGACTGTAGAACTCTGAACCCCTATAGTGA	3483	0.37055162508644074	Illumina DpnII expression PCR Primer 2 (95% over 22bp)
ACTGCTAGGCGAAAATGGCGGCCGGCACTCGCCTTCAGCACCGCAGC	1765	0.1877759455290175	No Hit
ACTGCTAGGCGTTGGATCAGTCCGACGATCGTCATGTACGTCATTTT	1462	0.1555401883078887	No Hit
ACTGCTAGTAAGTGAAGCAGATGAATTGTATCAAACATTTAATGAAA	1405	0.14947603595935954	No Hit
ACTGCTAGAACTATAGTGGAGTTGGAGTGTTGTGGTTACCTACTGAG	1405	0.14947603595935954	No Hit
ACTGCTAAAACGCAAAAGTAATTTAAAAGGTGCTGGACGTGTGCGGT	1320	0.1404330017554125	No Hit
ACTGCTAGTAATGAGATGAGAGAAAGAAAGAGGAAGGAAGGAAGGAA	1267	0.13479440395765732	No Hit
ACTGCTAGCTAGAAATGGGGACTGTAGAACTCTGAACCCCTATAGTG	1230	0.13085802436299804	Illumina DpnII expression Adapter 1 (95% over 21bp)
ACTGCTAGGTATTTGGTGGGCTGGCCGGAGGTGGCGAGTGCCTATGT	1092	0.11617639236129582	No Hit
ACTGCTAGTATTTCCGTGTAAAATATCTAAGCTAATGAATGATGAAT	1030	0.10958029682429918	No Hit
ACTGCTAGGTATTTGGTGGCTGGCCGGAGGTGGCGAGTGCCTATGTG	1016	0.10809085589659025	No Hit
ACTGCTAGCGGAGTGCTCAGGGGAACCCCAGGGCCAAAAAGGGGGAG	993	0.10564391722963987	No Hit
ACTGCTAGAAGGTAAGCATTTCAGCTGACAACTGAGTGATGAGAAGG	965	0.10266503537422203	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCATGCG	30	4.0960367E-6	41.01619	9
TGCTAGG	22780	0.0	40.89915	3
TGCTAGC	20655	0.0	40.877182	3
GCTAGCG	5515	0.0	40.755882	4
GCTAGCT	5325	0.0	40.592545	4
GCTAGAC	5230	0.0	40.58485	4
TGCTAGA	22985	0.0	40.534378	3
GCTAGCC	4945	0.0	40.3941	4
CTAGACG	1635	0.0	40.389027	5
GCTAGGC	5650	0.0	40.36283	4
CTAGCGG	1865	0.0	40.35641	5
CTAGCCG	1610	0.0	40.25191	5
CTAGCGC	1135	0.0	40.112747	5
GCTAGGT	5275	0.0	40.08312	4
GCTAGGG	7030	0.0	40.053505	4
CTAGGCG	1820	0.0	39.88937	5
CTAGTTC	1090	0.0	39.887302	5
GCTAGGA	5370	0.0	39.755913	4
CTAGTCG	1130	0.0	39.74577	5
GCTAGTC	4175	0.0	39.739037	4