SRR2099184_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099184_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	868826
Sequences flagged as poor quality	0
Sequence length	47
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTATAGTGACACCTCTGGTCCGACGATCGTCGGACTGTAGAACTCTG	6013	0.6920833400473743	Illumina DpnII expression Sequencing Primer (100% over 23bp)
CTAGACTGCTCAGAAGAAGTTCGCCAGGGACACTGTCTAGACTCCTT	1617	0.18611321484393883	No Hit
CTAGACTGAATAATGCGAACGGGTACCTAGACTGTTTTTTTTTTTTT	1244	0.14318171877913413	No Hit
CTATAGTGACACCTCTGGGTACCAGAGGTGTTGACGATCGTCGGACT	1236	0.14226093602171205	No Hit
CTAGACTGAGCAGCCAGCGACTCACTATAGTGAGTCGTATTACCGGC	1012	0.11647901881389369	No Hit
CCAGACTGCGCGATGCTGTCAAGAGCACGGCGCTGCTAATACCCGGA	875	0.1007106140930405	No Hit
CTATAGTGACACCTCTGGTTGACGATCGTCGGACTGTAGAACTCTGA	869	0.10002002702497394	Illumina DpnII expression Sequencing Primer (100% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTGAACG	605	40.660187	6
AGACTGC	16570	40.54128	3
GACTGCG	4865	40.409107	4
AGACTGG	21355	40.37506	3
ACTGCGA	1550	40.20549	5
GTGACAC	2940	40.09258	6
AGACTGA	23355	40.086178	3
TGAACGC	365	39.87576	7
GACTGGG	7370	39.858612	4
GACTGGT	3875	39.78228	4
GACTGTC	3965	39.706493	4
GACTGGC	4575	39.6996	4
GACTGCA	4975	39.63925	4
ACTGGCG	1070	39.466347	5
GACTGAA	7470	39.4348	4
GACTGCC	3420	39.38064	4
TGACACC	3025	39.372616	7
ACTGCGC	1380	39.365005	5
GACTGAC	5330	39.306755	4
ACTGGAC	1385	39.22289	5