SRR2099177_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099177_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	274620
Sequences flagged as poor quality	0
Sequence length	47
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGATGCAGCAAACAAACGACTCACTATAGGGAGTCGTATTACCGGC	1129	0.4111135387080329	No Hit
CTGATCCTCATGGTGTTGCCGATCGAGATCATCGCGACCCAGCCCAG	985	0.3586774451969995	No Hit
CTGCTGCACCTGGCGCACATCACCGGCTGCGGACTGCGGTGCCAGGA	737	0.26837083970577524	No Hit
CTGATGCATTATGTATAGGTGGACATGTGGCCCAAATTTATGCCATC	503	0.18316218775034593	No Hit
CTTATGGACACAAAACCGTGTAGTGAGACCTGGGATGCAGGACTGGA	445	0.16204209453062413	No Hit
CTGATGACACTCCAGGCGTGGACGTCGCCGTCGTCGCAGTGAAGATA	347	0.1263564197800597	No Hit
CCGATGCTGGCGAGATAGCGGTGCCCAGCAGCGCATCGGCGTTTTCC	303	0.11033428009613283	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACATCAC	50	5.820766E-11	41.02971	17
CGAACTT	20	0.001110714	40.999817	15
CGTATGG	20	0.001110714	40.999817	13
CGTATGA	25	6.7256E-5	40.999817	15
GGGCGTT	25	6.7256E-5	40.999817	14
CTCGACG	30	4.0966515E-6	40.999817	16
TCGAGCG	20	0.001110714	40.999817	14
TCCATAC	20	0.0011117097	40.992355	36
CATGACG	40	1.5459591E-8	40.992355	7
ACTAGCG	20	0.0011117097	40.992355	8
ACCTACC	20	0.0011117097	40.992355	8
GATGCGA	20	0.0011117097	40.992355	3
CGTGTAC	20	0.0011117097	40.992355	11
CGGCTAC	20	0.0011117097	40.992355	9
TTCATCG	160	0.0	40.992355	10
TACAACG	20	0.0011117097	40.992355	10
CAGAACG	25	6.732828E-5	40.99235	7
GCAACCG	45	9.549694E-10	40.99235	6
CACGCAA	75	0.0	40.99235	7
CACTGCG	30	4.1017847E-6	40.99235	7