SRR2099176_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099176_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1523690
Sequences flagged as poor quality	0
Sequence length	43
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTACGTCATCTGTTAACCATCAAGAGACTGGAGGCCACATTGA	3380	0.2218298997827642	No Hit
GTACGTCACGCAGCCCAAGACAGAACCTTGTGTGTGTCTTAGC	2311	0.15167127171537517	No Hit
GTACGGCAACCTAACGTCCGTCACCATCTCGACGCCCTCTTCC	2269	0.1489148055050568	No Hit
GTACTGCAACATAGTTCTTTGCTGTAAGAATCAACTGCAAAGC	2050	0.13454180312268244	No Hit
GTACGTCAACTACAACTAACCAGTACCCCGGAGCTCTTGCCTC	1901	0.1247629110908387	No Hit
GTACGTCATATGAGGCCAACATGTTCTACATAGTGAGTTCCAG	1747	0.11465586831967131	No Hit
GTACGTCCCAGCGCCTGAGGTACGGCGGATCCGAACATCGTGT	1670	0.10960234693408764	No Hit
GTACGTCAGTTATGGATGAGGACATTCTTCTGGTGGAACTTGG	1665	0.10927419619476401	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGCTT	25	1.2260045E-4	37.039944	9
TTTGCGC	70	0.0	37.039944	9
TAAGCGC	25	1.2260045E-4	37.039944	9
AGTCGCT	45	2.593879E-9	37.039944	8
ATAGCCG	160	0.0	37.03994	8
TTACCGC	20	0.0018323897	37.03994	9
CGGTATC	35	5.62879E-7	37.00345	10
ACGTCAC	36955	0.0	36.873837	3
CGTCACA	9335	0.0	36.787357	4
CGTCAAC	10215	0.0	36.771614	4
TCAGGCG	565	0.0	36.70371	6
TACGTCA	123730	0.0	36.696392	2
CGTCAGC	10505	0.0	36.690506	4
CGTCATA	6155	0.0	36.66441	4
CGTCACG	9100	0.0	36.659153	4
CGTCAGT	8010	0.0	36.655544	4
CGTCATC	8430	0.0	36.652008	4
GTCACGC	2060	0.0	36.580807	5
ACGTCAA	33560	0.0	36.549732	3
GTCAACG	2015	0.0	36.478886	5