SRR2099170_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099170_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	620840
Sequences flagged as poor quality	0
Sequence length	42
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATGCGCATCAGGCCGCGACTCTTTCAAGACCGCCGAGATCA	1804	0.2905740609496811	No Hit
GATGCTCACTACGGTGCAGAGCCCCAATTCCTACTTTATGGA	1723	0.27752722118420203	No Hit
GATGCCCGCAGGCTCGAACATGGCCATGATGATCCGCGAATG	1518	0.24450744153082918	No Hit
GATGATCCCCGTACGTCCTGGTCAACAACGCCGGCGTGAACG	1045	0.16832034018426648	No Hit
GATGCTGACGGGCTCAGCAGCGTGCCGCCGACGGCGACCGCG	1028	0.16558211455447458	No Hit
GAAGCTGATACCGCTCAGGTCTACCATCTCGTGCCTCGATGA	964	0.15527350041878743	No Hit
GATGCTCACCGCCTTGCTCACCCCCCTTACCGCCCCCAGTCT	854	0.13755556987307518	No Hit
GATGCTCTCGGGCTGCTGAAAGCACCTTAGAATTTCTAAGTG	712	0.11468333225951938	No Hit
GATGCGCAGGGGGCAGACTTGCTAATATACCCCGTTTCTTGC	637	0.102602925069261	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTGT	20	0.0021048586	36.00524	8
AGCCGCT	30	1.0012369E-5	36.00524	8
TCGTTAT	20	0.0021048586	36.00524	8
ACCGGTA	20	0.0021048586	36.00524	9
ACACGAA	30	1.0012369E-5	36.00524	8
ATAGGCG	25	1.447382E-4	36.00524	8
GCACGTT	40	4.8665243E-8	36.00524	9
CAACCGG	55	1.6370905E-11	36.00524	7
CACGATA	30	1.0012369E-5	36.00524	7
CATAGGC	50	2.401066E-10	36.00524	7
AACGCAT	20	0.0021048586	36.00524	8
ATGCGTA	50	2.401066E-10	36.00524	8
ACATCGG	30	1.0012369E-5	36.00524	8
CCTATCG	20	0.0021048586	36.00524	7
CATTTCG	180	0.0	36.00524	7
AGTACTC	20	0.0021048586	36.00524	8
TCCGGTA	20	0.0021048586	36.00524	6
TCAAACG	95	0.0	36.00524	6
CACTACG	355	0.0	36.005238	7
ACTACGG	270	0.0	36.005238	8