FastQCFastQC Report
Thu 26 May 2016
SRR2099140_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2099140_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475261
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTAGTCCTAGGGCCAGGAGGAGCCGACTAGGAGTCCTGGCT17610.37053324383864866No Hit
AGCTAGTCTCCGAAGGTTGGCGCTTGCCGCTATAATGCGCATT13040.2743755536431561No Hit
AGCTTGGCCGACCGCTGGCAGGCGGAAGGCAGGATCCCGAGGC10280.21630220026469665No Hit
AGCTAGTCCCGTCGGTGCCCAGCCGCTGCCTGCTCTGTTATCT9280.19526113020003746No Hit
AGCTAGTCTCGGCCCGGCATCACGCGCTCTTGGACGTGGACAG9180.19315702319357153No Hit
AGCCAGTCCGTGCCACGTGTCCCGATGACCAGCAGGGCCACGA9130.19210496969033858No Hit
AGCTAGTCGCCAGGGCTGTGCATCCGTCTTTCACAAGGTCACC8590.1807427918554226No Hit
AGCTGCTCGTACTAGCAGCTAGTACGATCGTCGGACTGTAGAA8200.17253677453020552No Hit
AGCTAATTTTTACGTGAGGAAAGAGGGCGTCAGCATTCGATAC8100.1704326675237396No Hit
AGCTAGTCAAAGGGCAGACTGGCGCGCCCCAGGGGTCTCTGGG7470.15717679338300428No Hit
AGCTAGTCTAGACGGGCAATAACCCACCCCCCCATAGAGGCTG6780.14265845503838942No Hit
AGCTAGTCAAACCGGAACGGACACTGTCCCAGAGAGAAGTCGG6450.13571490191705188No Hit
AGCTAGTCAACAGGGCGAAGCAAAATGGCAGATCGATGGAGTC5840.12287984917760979No Hit
AGCTAATTTTTACGGTGAGGAAAGAGGGCGTCAGCATTCGATA5300.1115176713426938No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCC200.001834502437.0260289
AACGCTC355.591137E-737.0260249
TCGTTTA200.001835451937.0221257
CGTTGCG251.228206E-437.0221258
TCCTCGA403.805144E-837.0221257
TCGGCTA200.001835451937.0221257
CTTATCG251.228206E-437.0221258
CATACGG200.001835451937.0221258
AATCGTA308.2677325E-637.0221255
TACAACG308.2677325E-637.0221258
TCTTGCG355.595757E-737.022127
GTCCTCG1700.037.022126
TCGTACG551.2732926E-1137.022127
GCGGTCT200.001843061936.99094812
TACGGCT355.63281E-736.99094811
TGCGGGT308.315657E-636.99094811
TTACGGT600.036.99094810
ACCCGGT355.63281E-736.99094810
GCGGACG501.8007995E-1036.9792714
ACTAATC200.001846876236.975382