SRR2099140_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099140_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	475261
Sequences flagged as poor quality	0
Sequence length	43
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGCTAGTCCTAGGGCCAGGAGGAGCCGACTAGGAGTCCTGGCT	1761	0.37053324383864866	No Hit
AGCTAGTCTCCGAAGGTTGGCGCTTGCCGCTATAATGCGCATT	1304	0.2743755536431561	No Hit
AGCTTGGCCGACCGCTGGCAGGCGGAAGGCAGGATCCCGAGGC	1028	0.21630220026469665	No Hit
AGCTAGTCCCGTCGGTGCCCAGCCGCTGCCTGCTCTGTTATCT	928	0.19526113020003746	No Hit
AGCTAGTCTCGGCCCGGCATCACGCGCTCTTGGACGTGGACAG	918	0.19315702319357153	No Hit
AGCCAGTCCGTGCCACGTGTCCCGATGACCAGCAGGGCCACGA	913	0.19210496969033858	No Hit
AGCTAGTCGCCAGGGCTGTGCATCCGTCTTTCACAAGGTCACC	859	0.1807427918554226	No Hit
AGCTGCTCGTACTAGCAGCTAGTACGATCGTCGGACTGTAGAA	820	0.17253677453020552	No Hit
AGCTAATTTTTACGTGAGGAAAGAGGGCGTCAGCATTCGATAC	810	0.1704326675237396	No Hit
AGCTAGTCAAAGGGCAGACTGGCGCGCCCCAGGGGTCTCTGGG	747	0.15717679338300428	No Hit
AGCTAGTCTAGACGGGCAATAACCCACCCCCCCATAGAGGCTG	678	0.14265845503838942	No Hit
AGCTAGTCAAACCGGAACGGACACTGTCCCAGAGAGAAGTCGG	645	0.13571490191705188	No Hit
AGCTAGTCAACAGGGCGAAGCAAAATGGCAGATCGATGGAGTC	584	0.12287984917760979	No Hit
AGCTAATTTTTACGGTGAGGAAAGAGGGCGTCAGCATTCGATA	530	0.1115176713426938	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCCC	20	0.0018345024	37.026028	9
AACGCTC	35	5.591137E-7	37.026024	9
TCGTTTA	20	0.0018354519	37.022125	7
CGTTGCG	25	1.228206E-4	37.022125	8
TCCTCGA	40	3.805144E-8	37.022125	7
TCGGCTA	20	0.0018354519	37.022125	7
CTTATCG	25	1.228206E-4	37.022125	8
CATACGG	20	0.0018354519	37.022125	8
AATCGTA	30	8.2677325E-6	37.022125	5
TACAACG	30	8.2677325E-6	37.022125	8
TCTTGCG	35	5.595757E-7	37.02212	7
GTCCTCG	170	0.0	37.02212	6
TCGTACG	55	1.2732926E-11	37.02212	7
GCGGTCT	20	0.0018430619	36.990948	12
TACGGCT	35	5.63281E-7	36.990948	11
TGCGGGT	30	8.315657E-6	36.990948	11
TTACGGT	60	0.0	36.990948	10
ACCCGGT	35	5.63281E-7	36.990948	10
GCGGACG	50	1.8007995E-10	36.97927	14
ACTAATC	20	0.0018468762	36.97538	2