SRR2099132_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099132_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	580741
Sequences flagged as poor quality	0
Sequence length	47
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TGCACTGATAGACCATCAGTTTTCCTTGGCTGGCTTACTTTGCAGAT	1094	0.18838001794259404	No Hit
TGCACTGACCCTCGTCCGTGAGTCGTATTACCGGCCGACGATCAGTG	875	0.15066957559393945	No Hit
TTCACCGAGGTACGGCGTGCTGATCCAGGGCGAGACCGGTACCGGCA	836	0.14395401736746674	No Hit
TGCAGTGATGAACGGTACGTATTAGCCAGGATGGTCTCGATCTCCTG	771	0.1327614203233455	No Hit
TGCACTGATGTCAGGGAGGAAGAAAGCTTGCACTGATTTTTTTTTTT	716	0.12329076128601218	No Hit
TGCACTAATGGCCCCACCTAATCTGCAGTATCCTTGCCAAATTGTGC	708	0.12191321088058187	No Hit
TGCACTGAGTCTATTTCAATGCGTGGGCTGACATCTGCTGGCCGAAA	683	0.11760836586361219	No Hit
TTCACTGCAAGTCTGCAAGTTTGGGAATGGATATCTCAGACCCTACA	635	0.10934306343103035	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCCCCG	20	0.0011115184	41.00147	8
CTGACGT	635	0.0	41.001465	5
CTAACGG	45	9.567884E-10	41.001465	7
ACGTCGA	30	4.10344E-6	41.00146	8
ATCCGAT	20	0.0011124606	40.994404	15
ACGGCTT	20	0.0011124606	40.994404	14
TTCGGCG	40	1.5505066E-8	40.994404	12
TTCGCTA	20	0.0011124606	40.994404	12
GTCTCGC	25	6.7401445E-5	40.9944	12
GTTAACG	25	6.7401445E-5	40.9944	14
CCTTTCG	25	6.7401445E-5	40.9944	12
CACCGGT	25	6.7401445E-5	40.9944	12
TTGGCGC	25	6.7469926E-5	40.987343	11
ATCCGCG	25	6.7469926E-5	40.987343	11
ACTGACG	2715	0.0	40.397392	4
CTGATAT	980	0.0	40.164703	5
CTCGTCC	240	0.0	40.133442	11
CACTGAG	14450	0.0	40.10766	3
ACTGACC	2680	0.0	40.08352	4
CACTGAC	10790	0.0	40.05147	3