FastQCFastQC Report
Thu 26 May 2016
SRR2099130_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2099130_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences239206
Sequences flagged as poor quality0
Sequence length47
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTACGGAAACTACAGGGGTGCTGGTGCCCGTGGCCTGGCCGTGTG39871.6667642116000434No Hit
GACTGCGTTAGAGGCAGGATGGCCTGGGTCTTCTTCTCGTCCAGCAG7560.31604558414086603No Hit
GACTACGTCCTATCGAAACGATCTCGAATAGCCACACAGTGACTACG7280.3043401921356488No Hit
GACTACGTTGTCTGCTACAGGTCACCTAGTTTGCAGGACACAACAAT7270.3039221424211767No Hit
GACTCCATCTAAGCCTCGAGACTGTCTCAAAAAAACAAAAAACAAAA6900.28845430298571106No Hit
GACTACGTACGCATAAAGGAAGAGCAGTGACTACGTTTTTTTTTTTT6390.2671337675476368No Hit
GACGACGAACGGCAGCTGTCAACGGGGCTTCGGGTATCGCAGTAGGT5840.2441410332516743No Hit
GACTACGTGCTGGGGCTTATGCTTACAGTAATTGACTGAGAAGCTGT5230.21864000066887956No Hit
GACTACGTTGAGGCGTATCAGGCATGGTGGTGCACACCTGTAGTCCC5030.2102790063794386No Hit
GACTACGTCGACGTCCGCGGCCGACGATCTCGACGTAGTCACTGCGG4930.2060985092347182No Hit
GACTACGTGAAAAGGCACGACGATCTCGATCGTAGGACTGTAGAACT4800.20066386294658162No Hit
GACTTCGAAAAGTATCTGCGCACGTTGGACGCCGTGGACGCCTGCTT4730.1977375149452773No Hit
GACTACGTAGAGGGGGGCAGTCCGACGATCTCGACCACGAAGTCACT4630.19355701780055684No Hit
GACTACGTCCGCACGCTCTACAGTCCGACGATCTCGAACGGAGGGCC4530.18937652065583638No Hit
GGCGACGTGATGCTCACTGAAGACGAGGACGTCTTTGCCGCCTGGCT4450.18603212294006002No Hit
GACTACGTGAGCGACATCAGTCCGACGATCTCGACGGCTAAGCCAGT4350.1818516257953396No Hit
GACTACGTTACAGCGGGTCCGACGATCTCGAGGGAAACCCCTATAGT4340.18143357608086755No Hit
GACTACGGAAACTACAGGGGGTGCTGGTGCCCGTGGCCTGGCCGTGT4210.17599892979273096No Hit
GACTACGTGGCGGCGTTGTGACTACGTTTTTTTCTTCGAGATCGTCG3850.16094914007173733No Hit
GACTACGTTCGGCGGTCGTGACTACGTTTTTTTACTCGAGATCGGAC3850.16094914007173733No Hit
GACTACGTTGGGCGTTCGATGCGACGTTTGCGGACTTGGTGGCGCTG3620.1513339966388803No Hit
GACTACGTTTGGGGAACCAGTCCGACGATCTCGAAAAAAGAAGCAGT3520.14715349949415985No Hit
GACTACGTTCGCAGGACGTGACTACGTTTTTAGGTTCGAGATCGTCG3510.1467354497796878No Hit
GACTACGTTAATGAACTGTCAAAGATGTCCTGCAGGATGTAAAATGC3340.13962860463366303No Hit
GACTACGTTAGTATGGACAGTCCGACGATCTCGAGCATACCAGCAGT3310.1383744554902469No Hit
GACTACGTGGGTGCGCGGTGACTACGTTTAATCTATCGAGATCGTCG2960.12374271548372531No Hit
GACTACGTCATATGTAGTAGAAACAGTGACTACGTTTCTAGAATCGA2950.12332466576925327No Hit
GACTACGTATGGAAGCCGGCTCACGCCTGTAATCCCAGCACTTTGGG2930.1224885663403092No Hit
GACTACGTTGGGCGTTCGGATGCGACGTTTGCGGACTTGGTGGCGCT2910.12165246691136511No Hit
GACTACGTGTCTTGGGTGAAAAGGCCAGGGCCCAATGGCTTAACTGC2910.12165246691136511No Hit
GACGACGAACGGCAGCTGGTCAACGGGGCTTCGGGTATCGCAGTAGG2890.12081636748242101No Hit
GACTACGTACAATCACCCGACGATCTCGAGGCCAGCCGCAGTGACTA2860.11956221833900488No Hit
GACTACGTACACCTACCGGAAAAAGCTGGGTGGGAGATGATGAAATA2850.11914416862453282No Hit
GTCTTCGTAGGCCTGGTCCGTGATAGGGGCATTCAAGGTGGCCGTTC2820.11789001948111669No Hit
GACTACGTCGCAATACGACGACTCACTATAGTGAGTCGTATTACCGG2780.11621782062322852No Hit
GACTACGTGAGGAATTTAGTCCGACGATCTCGACAGTGGAACTCTGA2730.11412757205086829No Hit
GACTCCCTAGGCCGGTAGTCCGACGATCGTCGGACTGTAGAACTCTG2700.11287342290745214Illumina DpnII expression Sequencing Primer (100% over 23bp)
GACTACGTCGACGTCCGCCGGCCGACGATCTCGACGTAGTCACTGCG2650.11078317433509194No Hit
GACTACGTAGTTACGCGACGATCTCGAGGTCATGGCCAGTGACTACG2640.11036512462061988No Hit
GACTACGTGGGGGGGGTAGTGACTACGTTTTTTTTTTTTTTTTTTTT2580.1078568263337876No Hit
GACTACGTACAAAACGCTCTCGAAAGAAACAACAGTGACTACGTTTT2540.10618462747589943No Hit
GACTACGTACAAAACGCCTCGAAAGAAACAACAGTGACTACGTTTTT2530.1057665777614274No Hit
GACTACGTGACGTTAAACAGTCCGACGATCTCGACTAGAAAGACAGT2480.10367632918906716No Hit
GACTACGTCCGCGAACCACGATCTCGAATAGCCACACAGTGACTACG2450.10242218004565104No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGGCA200.00109427641.12206341
CTTCGTA505.820766E-1141.018833
CGTGGTT401.5357728E-841.018836
GTGCAAG352.4978362E-741.018837
CGTGGGT1400.041.018836
GTCGCCT401.5357728E-841.018837
CGTATTG800.041.018836
GTCGATA256.70463E-541.018837
CGTATGT1250.041.018836
GTCGAGC256.70463E-541.018837
GTACAGA401.5357728E-841.018837
GTCGACC256.70463E-541.018837
ATCTAAG1000.041.018837
CTCCGGG401.5357728E-841.018833
CTCCGCA256.70463E-541.018833
CGTGCAT401.5357728E-841.018836
CGTGCAA850.041.018836
CGTGAGA2050.041.018836
GTGGGCG900.041.018837
GCCGGAT650.041.018837