FastQCFastQC Report
Thu 26 May 2016
SRR2099121_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2099121_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences228669
Sequences flagged as poor quality0
Sequence length43
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTGCATGTACCCTTTGAACTATACCAGTTCTCAGATCCCTA24851.0867236048611748No Hit
ACGTGAATCGCTCATCGCCTGCCGCGCCCTCGCCGTGCCGACC8570.3747775168474957No Hit
ACCTGCACCACCCGCGGGATTGAGCTCCACCAGATCCATCGAG7820.34197901770681643No Hit
ACGTGCATACTTTGTCCTGTCACGTGCATTTTTTTTTTTTTTT7480.3271103647630418No Hit
ACGTGCATGGCAGCGACGATCACTTTACGTGCATTTTTTTTTT7350.32142529157865735No Hit
ACGAGCATACATGCCGACGATCCAGCAACGTGCATTTTTTTTT7010.30655663863488275No Hit
ACGTGCATCGTCACGTGCATTTTTTTTTTTTTTTTTTTTTTTT6780.29649843223174105No Hit
ACCTGCACCACCCGGCGGGATTGAGCTCCACCAGATCCATCGA5850.2558282932972987No Hit
ACGTGCATAGCCAGTGGAGACACCAGCATCCAGACTCTGGGGC5170.22609098740974948No Hit
ACGTGCATGATGGGGCCCAGAGGGCTCCACACCAGCCCCAGGT4940.2160327810066078No Hit
ACGTGCATACATGCCGACGATCCAGCAACGTGCATTTTTTTTT4560.19941487477533026No Hit
ACGTGCATGGCAGGCGACGATCACTTTACGTGCATTTTTTTTT4280.18717010176281001No Hit
ACGTGCATATGACCGCTGATGCATGCCGGCGGCATGGAGCCGG4160.18192234190030132No Hit
ACGTGCATCCCACGGAGAAACCCCCCTGGCGGCAAGTCCAGCC4020.17579995539404117No Hit
ACCCGCATGAGTACTTCAGGTCTGAACGGCTGTACATAGCCCC4010.17536264207216545No Hit
ACGTGCATCAGTTCCCCACCGCGACGCGGCGCGTGCGCGGGCG3770.16486712234714807No Hit
ACGAGCAGCCTCATGGCACGATGAAGTGGGGTCGGCCTGGATC3690.1613686157721423No Hit
ACGTGCAGGGACTGGCCGTCGCCGGCAATCGATCCGGCCTAAC3510.15349697597837922No Hit
ACGTGCACTTGTCATGCCTCACGACCTGATCAACTCCAAGCCT3440.15043578272524916No Hit
ACGAGCAGCCTCATTGGCACGATGAAGTGGGGTCGGCCTGGAT3280.14343876957523757No Hit
ACGTGCATTTTGTGCTGGAAGATGGAAAGATCATGGCTGACTA3230.14125220296585894No Hit
ACCCGCATGAGTAGCTTCAGGTCTGAACGGCTGTACATAGCCC3060.13381787649397164No Hit
ACGTGCATGAATTGGTTCCCGCTCTTGCCGCGTCTGCTCCAAC3020.13206862320646873No Hit
ACGTGCCTCAGACCAGTCCGACGATCATGGTACGTGTCTGGAT3010.131631309884593No Hit
ACGTGCATCCTGCGAAAGAAGGTGGCCGTTCCCAGAGGGCTGA2980.13031936991896584No Hit
ACGTCCATCTATTCCGACACGGATGCTACGGATGAGGATGTAG2970.12988205659709012No Hit
ACGTGCATAATTACAGTCCGACGATCGATGTACGTTTCATGAT2900.12682086334396006No Hit
ACGTGCATTTAGCGTCCGACGATCAGTCAGCTAATTAAGCTTG2760.12069847683769991No Hit
ACGTGCATCTCGGGGGCAATAACCCACCCCCCCATAGAGGCTG2730.11938653687207272No Hit
ACGAGCTTCAACTTCCAAGGAAGGCAGCAGGCGCGCAAATTAC2680.11719997026269412No Hit
ACGTGTTTAGTAGGAGAAAATCGCCTCGATCAGCAGCTGACCG2660.11632534361894266No Hit
ACGTGCATGATGGGGGCCCAGAGGGCTCCACACCAGCCCCAGG2640.11545071697519121No Hit
ACGTGCATATGCCCAGTCCGACGATCTCATCACGTGCATAGAT2620.11457609033143977No Hit
ACGTGCATGCAGAGTTTGTATTTATGGGTCACATGAGATATTT2620.11457609033143977No Hit
ACGAGCTTCAACTTAACAATACAGGACTCTTTCGAGGCCCTGT2540.11107758375643398No Hit
ACGTGCATGTCTGCGCCGCCGCAACCAGCTGGTCGTGCTGGCC2470.1080163905033039No Hit
ACGTGCATGGATTCGTGCATTTTTTTTTTTTTTTTTTTTTTTT2420.10582982389392527No Hit
ACGAGCATGGCACGAACAAGCAGCTTCCTGCTGCAGCCCCGGA2420.10582982389392527No Hit
ACGTGCATGCGAGCAGTCCGACGATCTACGCACGTCTGGAGAT2360.10320594396267092No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCGGG452.590241E-937.01597613
CGACAGA355.586098E-737.01597213
AGCGACG650.037.00787712
TGTACCA1100.037.0078778
TCCGGCA200.001836931937.0078748
ATGGGCC251.2289934E-437.00787410
CGGGTAA200.001836931937.00787411
GTACCGC355.5956843E-737.0078749
GTCTGCG403.803143E-837.0078749
TCACACG251.2289934E-437.0078748
ACCGCTT308.2707775E-637.00787411
TTGTCGC200.001836931937.0078749
GCTGCGA200.001836931937.0078749
TATATCG251.2289934E-437.0078748
TATGACC452.5956979E-937.0078748
TGTTGCG200.001836931937.0078748
CCCCGCG200.001836931937.00787411
TGTCTAT200.001836931937.0078748
GAGCGGC200.001836931937.00787410
CCTCATT600.037.0078749