SRR2099109_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099109_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	892811
Sequences flagged as poor quality	0
Sequence length	47
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TGCACTGACATAAACCAACAATAGCTTGCACTGATTTTTTTTTTTTT	1462	0.16375246272727376	No Hit
TGCACTGAAGATTAGTGGGAAGAGATTGCAGCTGGCAAGTGCCGCCG	1123	0.12578250043962272	No Hit
TGCACTGAACTGACATGGGCCAGGGATATCCTGAGAGGCTTCAAACT	1119	0.12533447728578612	No Hit
TGCACTGAATGAGGAAGTCCGACGATCAGTCATGGCGTATAGCTTGC	1107	0.12399040782427637	No Hit
TGCACTGAAATGGCAGTCTGCATTCCTATGGGCGTGCAGGGGGGCGA	1092	0.12231032099738914	No Hit
TGCACTGAATTAGCAGGAGCTTGCACTGATTTTTTTTTTTTTTTTTT	1082	0.12119026311279767	No Hit
TGCACTGAAGTCGACGTCCTGAAGGGCAGCTGTTGCCTGGTATAACC	1027	0.11502994474754456	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGCCC	20	0.0011118484	41.0014	14
ACGCCGT	25	6.738506E-5	40.999104	8
AATCGGC	25	6.738506E-5	40.999104	8
GCGACAC	40	1.5512342E-8	40.996807	10
GGTCGGC	30	4.1091334E-6	40.996807	10
ACCGCTA	20	0.0011124613	40.996807	10
CATTGCG	20	0.0011124613	40.996807	10
CGCCGTT	20	0.0011124613	40.996807	9
TATCGCT	35	2.5187182E-7	40.996807	11
ATCGCGT	30	4.1091334E-6	40.996807	10
AACGCCC	30	4.110716E-6	40.99451	32
ACTGACG	4905	0.0	40.58117	4
CACTGAG	24305	0.0	40.526783	3
ACTGAGG	8085	0.0	40.31452	4
CTGATAC	1270	0.0	39.86921	5
ACTGACC	3960	0.0	39.70494	4
CTGAGCG	880	0.0	39.60141	5
ACTGATA	4950	0.0	39.591053	4
ACTGACA	6775	0.0	39.576996	4
CACTGAA	22415	0.0	39.480957	3