SRR2099104_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099104_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1494878
Sequences flagged as poor quality	0
Sequence length	42
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATGCTCTCATACCTGGCCAACATATTGAGACCCTGAAGAAA	3217	0.21520150808293387	No Hit
GATGCTAAGGACGGAAGAACGGGTTTAATTATACTTAACCCA	2491	0.1666356719411216	No Hit
GATGCTAACTTTGGAAATTATCACCTCCATTTTACTCATGCA	2381	0.1592772119196349	No Hit
GATGCTCCTTGTTTTACTTAATGTGTGCTTATCTTTCAGGAT	2229	0.14910915807176237	No Hit
GATGCTCATAGGCGATCTTGGGATGCTCATTTTTTTTTTTTT	2192	0.14663403970089867	No Hit
GATGCTCAGTTAGAAAAAGCCTACCAGGGTGACTATGATGTA	2122	0.14195138332358895	No Hit
GATGCTCAGCCTAGTCTTAAACCTGGTACCTACACTGGAGAC	1753	0.11726709470605629	No Hit
GATGCTCAGCGTAGTGAGCCAAGATCACACCACTGCACTCCA	1504	0.10061021702105456	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATTACG	130	0.0	36.00552	7
CGCGTAG	25	1.448576E-4	36.00432	10
CCGTGTA	20	0.0021060714	36.004314	10
TAACGAT	40	4.8754373E-8	36.004314	11
TCGCGTA	20	0.0021060714	36.004314	9
GTACGAG	20	0.0021060714	36.004314	9
ATAGCGC	30	1.0025871E-5	36.003113	8
ATTCGCG	25	1.4488611E-4	36.003113	8
AGCGGAA	50	2.419256E-10	36.003113	8
ATATCGG	25	1.4488611E-4	36.003113	8
AATTACG	65	0.0	36.003113	8
ATTGCGA	50	2.419256E-10	36.003113	8
ACGAGTA	60	1.8189894E-12	36.003113	8
CGAATCG	55	1.6370905E-11	35.999496	5
TGCTCAC	28590	0.0	35.8472	3
TGCTCAG	40140	0.0	35.594727	3
GCTCATA	5535	0.0	35.412952	4
CTCACGT	2555	0.0	35.365456	5
TCATGCG	1080	0.0	35.33166	6
CTCACGG	3630	0.0	35.30529	5