Basic Statistics
Measure | Value |
---|---|
Filename | SRR2099102_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 692188 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ACCTGCATGCGCCTTGGGTGGGAGGAGGAGGAGGTGGAAGAGC | 1500 | 0.2167041324033355 | No Hit |
ACGTGATTGCCTCGTCGCGTCGCATATCCGTCCGGAAGTTCCG | 1415 | 0.2044242315671465 | No Hit |
GCATGCATGCCTTGAAGAGGCGGTCTATGCCCCAAAGGCCTGG | 1396 | 0.20167931255670427 | No Hit |
ACGAGCTTCAACTAATAACAATACAGGACTCTTTCGAGGCCCT | 1196 | 0.1727854282362595 | No Hit |
ACGTGCATTCCGGGGAACCTTTGGGAGCCGTGACTCCCTGTGC | 1092 | 0.15776060838962824 | No Hit |
ACGTGCATTCGAAAGACTCTGTAGCTTTCTGTCCAGAAAGTAC | 1065 | 0.15385993400636822 | No Hit |
ACGTGCATACTGGCGCGATCCCTTTACGTGCATTTTTTTTTTT | 1018 | 0.1470698711910637 | No Hit |
AAGTGCAGAGCGTGTTCTACTTGATGTGCTTGCTTTGCATGCC | 903 | 0.13045588770680797 | No Hit |
AGGTGCAAAGCTTCAGCAGGTTTTCAAAACTCGCCTGGCTAAG | 899 | 0.1298780100203991 | No Hit |
ACGTGCATTAGTTGGCGTCCACCGCCCCAGGAGGCCGCCTGAG | 854 | 0.12337688604829901 | No Hit |
ACGTGCATACCCCGCTGGACGAGGCGGAGTACCAGGAGATCCG | 833 | 0.12034302819465231 | No Hit |
ACGTGCATACTGGGCGATCCCTTTACGTGCATTTTTTTTTTTT | 795 | 0.11485319017376781 | No Hit |
ACGTACATGCTTTCTTCACGTGCATTTTTTTTTTTTTTTTTTT | 750 | 0.10835206620166775 | No Hit |
ACGTGCATAACTATGGAAGTGCATCACTCCAAGTGCGGCGCAC | 745 | 0.10762971909365664 | No Hit |
ACCTGCATGCGCCGTTGGGTGGGAGGAGGAGGAGGTGGAAGAG | 743 | 0.1073407802504522 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGTCGG | 20 | 0.0018365617 | 37.01995 | 13 |
CGTAGTG | 20 | 0.0018391713 | 37.009247 | 11 |
ACCCGTT | 20 | 0.0018391713 | 37.009247 | 10 |
TTCGCAT | 20 | 0.0018391713 | 37.009247 | 11 |
AATCCGT | 35 | 5.6191493E-7 | 37.006577 | 9 |
GAGCGTA | 50 | 1.7826096E-10 | 37.006577 | 8 |
TTGCGTA | 50 | 1.7826096E-10 | 37.006577 | 8 |
TTACGTC | 55 | 1.2732926E-11 | 37.006577 | 8 |
TAGGCGC | 25 | 1.2318288E-4 | 37.006577 | 8 |
CAAGCGG | 20 | 0.0018398241 | 37.006573 | 17 |
ACATCGC | 20 | 0.0018398241 | 37.006573 | 9 |
ATAGGCG | 40 | 3.8307917E-8 | 36.998554 | 7 |
ATAGCGT | 45 | 2.6175258E-9 | 36.998554 | 7 |
GCATATA | 685 | 0.0 | 36.998554 | 5 |
GCATACT | 1245 | 0.0 | 36.849968 | 5 |
TGCATAC | 3435 | 0.0 | 36.78048 | 4 |
TGCATAT | 3040 | 0.0 | 36.752487 | 4 |
GCATAAG | 750 | 0.0 | 36.751896 | 5 |
CGAGCTT | 1185 | 0.0 | 36.68368 | 2 |
TGCATAA | 3045 | 0.0 | 36.631393 | 4 |