FastQCFastQC Report
Thu 26 May 2016
SRR2099088_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2099088_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences975226
Sequences flagged as poor quality0
Sequence length47
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGATGCAGAAAAACTCTCGTTTGCCAGTCCTGATGCATTTTTTTTT42470.43548879951929087No Hit
CTGATGCACGGATGTTGGAGCGAGGCAAAGGATTTCTTGAAGGAAAG35300.3619673798688714No Hit
CTGATGCAGCATAGGGTCGACGATCAGCTCATGTGTGCAGTCCTGAT27530.2822935401640235No Hit
CTGATGCAGAGGAGTAAGGCAAGGGAAAGCTCCCTAAGCAACCTGTC15410.15801465506456966No Hit
CTGATGCAGTAAAACGAGTTCTGGGCAAGGGAAAGCTCCCTAAGCAA14900.1527850980183055No Hit
CTGATGCAAGCCACAGGGTTTGAGACCATCTTGGCCATGGTGAAACT13700.14048025790944868No Hit
CTGATGCATTCAACTGAGACTGTTGCCTTTCTATATTGGTAATGACT12580.12899574047451565No Hit
CTGATGCACTCTTGAATACGAATGGGTGAGTCAGATGATTCCATTCT11930.12233061874888489No Hit
CTGATGCACCGGCACACGTACACTTTCTTTGCACAATGTCTTTGGTT10950.11228166599331847No Hit
CTGATGCACTAAGTAGCGACCAAGGACCAGGTAGCTAACTCAGCCTT10920.11197404499059704No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTACTC304.1096573E-640.99661612
CGTTAGA200.001112537640.99661312
GCGTGTA200.0011133840.99030723
AGCCGCG256.751574E-540.98610711
CCGTAGC200.001113941840.98610310
TACCTCG352.5242116E-740.98610310
CGTGTAT200.001113941840.98610324
GATGCAC179350.040.763993
ATGCACG50600.040.6892244
ATGCACC35300.040.5487024
TGCACGG21000.040.525195
ATGCAGG52700.040.429764
ATGCAAT59400.040.3575064
TGCACCG9300.040.3519365
ATGCAGA78950.040.3121344
GATGCAG219950.040.288293
ATGCAAG73450.039.952514
ATGCAAC58250.039.9220964
GATGCAA304700.039.8444443
GCACGTA3400.039.8071676