SRR2099088_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099088_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	975226
Sequences flagged as poor quality	0
Sequence length	47
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGATGCAGAAAAACTCTCGTTTGCCAGTCCTGATGCATTTTTTTTT	4247	0.43548879951929087	No Hit
CTGATGCACGGATGTTGGAGCGAGGCAAAGGATTTCTTGAAGGAAAG	3530	0.3619673798688714	No Hit
CTGATGCAGCATAGGGTCGACGATCAGCTCATGTGTGCAGTCCTGAT	2753	0.2822935401640235	No Hit
CTGATGCAGAGGAGTAAGGCAAGGGAAAGCTCCCTAAGCAACCTGTC	1541	0.15801465506456966	No Hit
CTGATGCAGTAAAACGAGTTCTGGGCAAGGGAAAGCTCCCTAAGCAA	1490	0.1527850980183055	No Hit
CTGATGCAAGCCACAGGGTTTGAGACCATCTTGGCCATGGTGAAACT	1370	0.14048025790944868	No Hit
CTGATGCATTCAACTGAGACTGTTGCCTTTCTATATTGGTAATGACT	1258	0.12899574047451565	No Hit
CTGATGCACTCTTGAATACGAATGGGTGAGTCAGATGATTCCATTCT	1193	0.12233061874888489	No Hit
CTGATGCACCGGCACACGTACACTTTCTTTGCACAATGTCTTTGGTT	1095	0.11228166599331847	No Hit
CTGATGCACTAAGTAGCGACCAAGGACCAGGTAGCTAACTCAGCCTT	1092	0.11197404499059704	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTACTC	30	4.1096573E-6	40.996616	12
CGTTAGA	20	0.0011125376	40.996613	12
GCGTGTA	20	0.00111338	40.990307	23
AGCCGCG	25	6.751574E-5	40.986107	11
CCGTAGC	20	0.0011139418	40.986103	10
TACCTCG	35	2.5242116E-7	40.986103	10
CGTGTAT	20	0.0011139418	40.986103	24
GATGCAC	17935	0.0	40.76399	3
ATGCACG	5060	0.0	40.689224	4
ATGCACC	3530	0.0	40.548702	4
TGCACGG	2100	0.0	40.52519	5
ATGCAGG	5270	0.0	40.42976	4
ATGCAAT	5940	0.0	40.357506	4
TGCACCG	930	0.0	40.351936	5
ATGCAGA	7895	0.0	40.312134	4
GATGCAG	21995	0.0	40.28829	3
ATGCAAG	7345	0.0	39.95251	4
ATGCAAC	5825	0.0	39.922096	4
GATGCAA	30470	0.0	39.844444	3
GCACGTA	340	0.0	39.807167	6