FastQCFastQC Report
Thu 26 May 2016
SRR2099086_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2099086_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501188
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGTGCATTTCTTGACAGGGCTGCAGATGATCTGCAGGGCCAG48590.9694964763721398No Hit
ACGAGGATTCAGCACGCTCGGCGCCTGCCAGCACGCCGCCGAC23170.4623015714661964No Hit
ACGTCCAGATCCGGGCTCCCGGCGGTGTGCTGCGGGGCGATCC22790.45471958626303904No Hit
ACGGGCATTATTGCAGTCCGACGATCGGCTTACGTGCATTTTT21610.43117552694797157No Hit
ACGTGCATCGGTGGGGTTCAGTGAGGTCGGGCAGGTTCGCTGT21130.42159828248082554No Hit
ACGTGCATGGTTACGTCCGACGATCCTTCCACGTGCATTTTTT17150.3421869637740728No Hit
AGGAGCATGACCGACTGCTGCTCCAGCGCTTCGGCGAACCCCT16790.3350040304237133No Hit
ACGAGCTTCAACTAAATAACAATACAGGACTCTTTCGAGGCCC14290.2851225488239942No Hit
ACGTGCCTGAGATAACAGAGCCTGTGGACGTTCTGGCTACTCT13450.2683623710064886No Hit
ACGTGCATTATCTGGCTTCGCGAACCTCATCCGACGCTTTCAA11180.22306998571394368No Hit
ACGTGCATATCGTGAAGGCGGCAGCTCTGGCAAAGCAGCTGGA11100.22147377830275267No Hit
ACGTGCATTTCTTGGACAGGGCTGCAGATGATCTGCAGGGCCA9150.18256622265497177No Hit
ACGGGCATTATTGGCAGTCCGACGATCGGCTTACGTGCATTTT9130.18216717080217404No Hit
ACGTGCATCGGATGCTGGATGGCAAGAGCTCTGGCTGAAGAAG8460.1687989337334493No Hit
AGGAGCATGACCGGACTGCTGCTCCAGCGCTTCGGCGAACCCC8070.16101742260389315No Hit
ACGTGCATAGTATGCCTTAGGTCACTCTAAGGGGGACCTGGCT8070.16101742260389315No Hit
ACGTGCATATAACGTCTGCAACCCTATCATTACCAAGCTGTAC7730.15423354110633136No Hit
ACGTGCATGCGGAGCATGATCTATGATTCTTTAGATTATGCAA7680.153235911474337No Hit
ACATTCATCGTCCAGGTTAAACTCTTTTTCGAGCCTATATTTT7220.14405771885998866No Hit
ACGTGCATTCTACCGACGATCTCTTGACGTGCATTTTTTTTTT7190.14345914108079205No Hit
ACGTGCATGCGGTACAGTCCGACGATCCTAAAACGTGCACGTT7160.1428605633015954No Hit
ACGAGCTTCAACTTCCAAGGAAGGCAGCAGGCGCGCAAATTAC7100.14166340774320216No Hit
ACGTGCATGGAGGAGAAGAATGAGCCTAAACACAGACTCGCAA6350.12669896326328645No Hit
ACGTGCATACAAGCAGTCCGACGATCGGCGCACGTGCACTGAT6210.12390560029370216No Hit
ACGTGCATCTGTGGCTGGGGGGCTGGAACCCCCTCACCCGCTT6010.11991508176572463No Hit
ACGTGCATTCTCCCAATCTTCTCCCTCCACCTCTCGATGGGGT6000.11971555583932578No Hit
ACGTGCTAAGTCGCGACGATCAGTCGCTCCTGGGAGCTTGCAC5960.11891745213373026No Hit
ACGTGCATGTCTCTCGAGATCACGCCACTGCACTCCAGCCTGG5780.11532598545855048No Hit
ACGTGCAGAGTAAAGACAAACAGAGAGCCAAATCATGAGTGAA5450.10874162988738756No Hit
ACGAGCTTCAACTAATAACAATACAGGACTCTTTCGAGGCCCT5290.10554921506500554No Hit
ACGTGCATCGACGGAGACTTTGAAAACACAGATGACTTTGGTG5260.10495063728580892No Hit
GCGTCCATCATTAGCTCAGAAGTACTGCAGCTTTTCTCAGTCT5250.10475111135941004No Hit
ACGTGCATTTCTTTGACAGGGCTGCAGATGATCTGCAGGGCCA5090.10155869653702802No Hit
ACGTGCATTTGACGCAACCTGTCATCGTGAAGGCCAAATTCTT5070.10115964468423028No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGGTC251.2226202E-437.0512968
ATACTAG1250.037.0512967
ATGAGCG452.579327E-937.0512967
ATCCCGT200.001828461137.0512967
TTGAACG200.001828461137.0512968
ATTGGTA251.2226202E-437.0512967
CATAACC2350.037.0512966
CAGTCGA251.2226202E-437.0512966
ATTATCC403.7794962E-837.0512967
CGTTTTC251.2226202E-437.0512967
TATGTCG452.579327E-937.0512968
CATCACG650.037.0512966
TGTAACG403.7794962E-837.0512968
TACCGTA200.001828461137.0512968
TACTTCG308.224075E-637.0512928
TAAAGGG308.224075E-637.0512928
TTTCGTG355.562142E-737.0512928
TATGCCG551.2732926E-1137.0512928
ATATCCG308.224075E-637.0512927
TACTAGA355.562142E-737.0512928