FastQCFastQC Report
Thu 26 May 2016
SRR2099080_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2099080_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences370399
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGATCGGCGCGAGGGAGTCGTATTACCGGCCGACGATCTAG139773.7734983085807463No Hit
CTAGATCGTACGTGAGTCGTATTACCGGCCGACGATCTAGACG118483.198712739505236No Hit
CTAGATCGTACGTGTGAGTCGTATTACCGGCCGACGATCTAGA71161.9211714934435569No Hit
CTAGATCGTTGGTCCGGCCGACGATCTAGACCAAGATCGTCGG63071.7027583767774752No Hit
CTAGATCGAGTCGCCGACGATCTAGCGACTGATCGTCGGACTG58691.5845075175688919No Hit
CTAGATCGTGGTCACTCACTATAGTGAGTCGTATTACCGGCCG56641.5291617957931853No Hit
CTAGATCGTACGTACCGGCCGACGATCTAGACGTAGATCGTCG45711.2340746060329537No Hit
CTAGATCGTTAGAAGTGAGTCGTATTACCGGCCGACGATCTAG36510.9856938058688064No Hit
CTAGATTGCTTGACTTTACTGCTTGTGCAGAACAGCAGTGGAA27010.7292136317862629No Hit
CTAGATCGTACGTCCGGCCGACGATCTAGACGTAGATCGTCGG20940.5653362995040484No Hit
CTAGATCGAGTCGGCCGACGATCTAGCGACTGATCGTCGGACT20810.5618265708060767No Hit
CTAGATCGAGTCGTCCGACGATCTAGCGACTGATCGTCGGACT19150.5170100351242849No Hit
CTAGATCGTACGTCGGCCGACGATCTAGACGTAGATCGTCGGA18410.4970315794589078No Hit
CTAGATCGGCGCGATTACCGGCCGACGATCTAGCGCGCGATCG17160.46328418813225736No Hit
CTAGATCGTGGCACTCACTATAGTGAGTCGTATTACCGGCCGA16460.44438564898933314No Hit
CTAGATCGTACGTTACCGGCCGACGATCTAGACGTAGATCGTC15110.4079384663565506No Hit
CTACATGGTGTGGGGAGATCGTCGCCATGCCGAAGATGATCGC14670.3960593846095697No Hit
CTAGATCGAGTCGGGCCGACGATCTAGCGACTGATCGTCGGAC14210.3836403446013623No Hit
CTAGATCGTACGTGGTGAGTCGTATTACCGGCCGACGATCTAG13650.36852151328702293No Hit
CTAGATCGTTAGACGACGATCGGCCCCTACAGTGAGTCGTATT13570.36636168024211724No Hit
CTAGATCGTTAGATAAGATCGTCGGACTGTAGAACTCTGAACC12610.34044368370324973Illumina DpnII expression Sequencing Primer (100% over 27bp)
CTAGATCGAGTCGCCCGACGATCTAGCGACTGATCGTCGGACT12090.32640476891136316No Hit
CTAGTTCAATAGAACGCCTGCGACTTCGCAGACCTTCTTCGAA11840.31965529064603304No Hit
CTAGATCGTACGTAGTGAGTCGTATTACCGGCCGACGATCTAG11770.3177654367317406No Hit
CTAGATCGAGTCGCGGCCGACGATCTAGCGACTGATCGTCGGA11600.3131757915113162No Hit
CTCAATCGACCGCCCGACGATCGGCCACTAGATCGTTTTTTTT11460.30939608368273136No Hit
CTAGATCGTACGTATTACCGGCCGACGATCTAGACGTAGATCG11460.30939608368273136No Hit
CTAGGTAGGTTTTGTTCACAGAGAGTGTAAGATTCAAGACTTC11300.30507641759292004No Hit
CTAGATCGTACGTGGAGTCGTATTACCGGCCGACGATCTAGAC10600.2861778784499958No Hit
CTAGATCGTTTCGGGGGGGGGCACTTAGGGAGGACAGATTGAC10510.283748066274477No Hit
CTAGATCGTCGCCGGTCGGTCTCCATTCGTGAGAGCGGTTGGG10090.2724089427887224No Hit
CTAGATCGTACGTTGAGTCGTATTACCGGCCGACGATCTAGAC10080.27213896365810925No Hit
CTAGATCGTACGTTTACCGGCCGACGATCTAGACGTAGATCGT9760.2634996314784867No Hit
CTAGATCGGTAATCGCAAGACCAACAACGTAATCGCCATGGCT9140.24676092538046807No Hit
CTAGATCGTTGCGCAGGATGCCAGGAGTTAAAGGCTCTGTCTC9010.24325119668249642No Hit
CTAGATCGAGTCGAGTGAGTCGTATTACCGGCCGACGATCTAG8150.2200329914497609No Hit
CTAGATCGATCCTGCCAGAGTACCCCACCCGTAGTGGCCTGGT7740.20896384709461957No Hit
CTAGATCGAGTCGCCGGCCGACGATCTAGCGACTGATCGTCGG7440.2008644731762235No Hit
CTAGATCGTTAGAACCGGCCGACGATCTAGTCTAAGATCGTCG7440.2008644731762235No Hit
CTAGATCGTTAGACCGACGATCGGCCCCTACAGTGAGTCGTAT7260.19600484882518582No Hit
CTAGATCGTTAGACGGCCGACGATCTAGTCTAAGATCGTCGGA7260.19600484882518582No Hit
CTAGATCGTCGCCGTCGGTCTCCATTCGTGAGAGCGGTTGGGT7240.19546489056395938No Hit
CTAGATCGTACGTTCGTATTACCGGCCGACGATCTAGACGTAG6980.1884454331680161No Hit
CTAGATCGTGACTCAGTCCGACGATCCCTAGCTAGATCGTCGG6920.1868255583843369No Hit
CTAGATCGACCTCGTACAGTGCTCTACGCCGGAAGTTCTACCA6750.18223591316391244No Hit
CTACATCGAGCTTGATGAGGTCCCTAGTGGAGCAGCAGTATCA6610.17845620533532758No Hit
CTAGATCGTTTCGGGGGGGGGGCACTTAGGGAGGACAGATTGA6600.17818622620471436No Hit
CTAGATCGTACGTAGTCGTATTACCGGCCGACGATCTAGACGT6490.17521645576796913No Hit
CTAGATCGTTAGAAGTCGTATTACCGGCCGACGATCTAGTCTA6450.1741365392455163No Hit
CTAGATCGCGTAGCTACAGTCCGACGATCAGTTTCTAGATCGT6370.1719767062006107No Hit
CTAGATCGGTTGGGTCAGAGCCACATGGCCAAAGCTGTCAAGT6300.17008685228631829No Hit
CTAGATCGACTCTCTTTAAAAGGGAGAAAAGGCCTTGAAATCT6220.16792701924141262No Hit
CTAGATCGTGGCACCTCACTATAGTGAGTCGTATTACCGGCCG6200.16738706098018621No Hit
CTAGATCGTGGCAGCTCACTATAGTGAGTCGTATTACCGGCCG5840.1576678122781109No Hit
CTAGATCGTTAGAGAGTCGTATTACCGGCCGACGATCTAGTCT5790.15631791662504488No Hit
CTAGATCGAGTCGCGTATTACCGGCCGACGATCTAGCGACTGA5730.15469804184136568No Hit
CGATATCGGCCAAGTTGAAGATTCCCTTTCATAGAGCAGGTTT5660.15280818792707324No Hit
CTAGATCGTTAGACCGGCCGACGATCTAGTCTAAGATCGTCGG5590.15091833401278082No Hit
CTAGATCGTTAGATGAGTCGTATTACCGGCCGACGATCTAGTC5590.15091833401278082No Hit
CTAGATCGAGTCGCTCTGAACCCCTATAGTGAGTCGTATTACC5330.14389887661683753No Hit
CTAGAGAGGTATAGTGTAGGGTCTCTCTCCAGTGTGAATTCTC5270.14227900183315828No Hit
CTACATGGTGTGGCGGAGATCGTCGCCATGCCGAAGATGATCG5260.1420090227025451No Hit
CTAGATCGGCGCGCGGCCGACGATCTAGCGCGCGATCGTCGGA5250.14173904357193187No Hit
CTAGATCGTCGCACCGACGATCCAGACCTAGATCGTCGGACTG5190.14011916878825267No Hit
CTAGATCGAGTCGGAGTCGTATTACCGGCCGACGATCTAGCGA4990.1347195861759886No Hit
CTAGATCGTACGTGAACTCTGAACCCCTATAGTGAGTCGTATT4960.133909648784149No Hit
CTAGATCGAGTCGAGTCGTATTACCGGCCGACGATCTAGCGAC4850.13093987834740375No Hit
CTAGATCGAGTCGCTCCGACGATCTAGCGACTGATCGTCGGAC4780.12905002443311134No Hit
CTCGATCAGCCCGTTTGGGTCGTTTTGCGTGATTGATGAATCA4770.12878004530249812No Hit
CTAGATCGAGTCGTCGTATTACCGGCCGACGATCTAGCGACTG4710.1271601705188189No Hit
CTAGATCGGCGCGTTACCGGCCGACGATCTAGCGCGCGATCGT4660.12581027486575289No Hit
CTAGATCGCTACTACAGTCCGACGATCACTGTCTAGATCGTCG4600.12419040008207366No Hit
CTAGATCGTACGTGGCCGACGATCTAGACGTAGATCGTCGGAC4500.12149060877594163No Hit
CTAGATCGTACGTAACTCTGAACCCCTATAGTGAGTCGTATTA4500.12149060877594163No Hit
CTAGGTAGGTTTTGGTTCACAGAGAGTGTAAGATTCAAGACTT4490.12122062964532843No Hit
CTAGATCGTACGTACCCCTATAGTGAGTCGTATTACCGGCCGA4490.12122062964532843No Hit
CTAGATCGCAGGCGTCTCTAGCTGCATATATAGCAGAAGATGG4490.12122062964532843No Hit
CTAGATCGCAAGTAGTCCGACGATCTCATTCTAGATCGTCGGA4460.1204106922534888No Hit
CTAGATCGAGTCGATTACCGGCCGACGATCTAGCGACTGATCG4390.11852083833919638No Hit
CTAGATCGAGTCGGCGACTGATCGTCGGACTGTAGAACTCTGA4360.11771090094735677Illumina DpnII expression Sequencing Primer (100% over 24bp)
CTAGATCGTGGCATCTCACTATAGTGAGTCGTATTACCGGCCG4280.11555106790245114No Hit
CTAGATCGTACGTACGATCTAGACGTAGATCGTCGGACTGTAG4270.11528108877183793No Hit
CTAGATCAATTCGGATGACAATAATTTCTCCAGACTTTATTTG4260.11501110964122474No Hit
CTAGATCGGTAAGGGACAAGAGAAGATAACCAGGTGAATATTA4240.11447115137999833No Hit
CTAGATCGGTAATCAGTCCGACGATCACGCGCTAGATCGTCGG4090.11042146442080028No Hit
CTAGATCGATACACTATATGCACGATTCAAAAAGCTCACAAAG4040.10907156876773424No Hit
CTGGATCCCAATTCTGAGAGTTGTACATCTTGTTCCAAAGGCA4010.10826163137589463No Hit
CTAGATCGATGAAGTGAAATATGGCGAGGAAAACTGAAAAAGG4000.10799165224528143No Hit
CTAGATTGCTTGATCTTTACTGCTTGTGCAGAACAGCAGTGGA3980.10745169398405505No Hit
CTAGATCGTACGTCTCTGAACCCCTATAGTGAGTCGTATTACC3900.1052918609391494No Hit
CTAGATCGGTTGGGGTCAGAGCCACATGGCCAAAGCTGTCAAG3880.10475190267792299No Hit
CTAGATCGCTTCTAGACTAGATCGTCGGACTGTAGAACTCTGA3860.1042119444166966Illumina DpnII expression Sequencing Primer (100% over 24bp)
CTAGATCGTTAGAATTACCGGCCGACGATCTAGTCTAAGATCG3840.10367198615547019No Hit
CTAGATCGCTATTTTGGCTTCCCACCGTGATGGCAATGGACTG3820.10313202789424378No Hit
CTAGAACAAGTGTGTAGCAACTGCTGTGCAGATCAGCTCTGTC3710.10016225745749854No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGTATCA700.037.12525637
TCTACCA452.5247573E-937.12525637
AACGAGG251.2077409E-437.12525637
CATACAC355.470738E-737.12525636
CATCATA452.5247573E-937.12525637
ACCCAAG200.001810028737.12525637
CACCCAA200.001810028737.12525636
TGAGTTG308.106577E-637.1252537
GTGTTCC200.001831824937.034899
AGGTATA1900.037.034897
CGGCGTT501.7644197E-1037.034897
GGGGACC251.2251924E-437.034898
CAGCGCG200.001831824937.034897
GCCTTCA200.001831824937.034898
GGAGCTA650.037.034897
GCAAGTA600.037.034898
GGTAATT200.001831824937.034898
GGTAATG452.586603E-937.034898
GGGCTTT501.7644197E-1037.034898
GGGCTTA403.7896825E-837.034898