SRR2099056_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099056_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	287476
Sequences flagged as poor quality	0
Sequence length	43
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGTACGGTGCGGCGGAAGTTGCAGTGAGACAAGATCGCAC	529	0.18401536128233315	No Hit
ATCGGTACGGTGCGGCGGAAGTTGCNGTGAGACAAGATCGCAC	374	0.13009781686123362	No Hit
ATCGGTACCCTCGCAGTCCGACGATCGACGGACTGTAGAACTC	345	0.12001001822760857	Illumina DpnII expression Sequencing Primer (95% over 21bp)
ATCGGCGCAATGCGGTCGGACCGGAGGCGCGCCCGTGGTTGCC	328	0.1140964810975525	No Hit
ATCGGCGCAATGCGTCGGACCGGAGGCGCGCCCGTGGTTGCCC	323	0.11235720547106542	No Hit
ATCGGTACCCATAGTGCTCAAGTTTATTATATTTTCTGCATCA	300	0.10435653758922483	No Hit
ATCGGTACGCGTCACTAAACCTAGATCCTTAGGTCATATACGA	296	0.10296511708803517	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAG	15	0.008016547	50.6259	23
TAAACCC	20	4.1607153E-4	50.035732	25
CACGAGG	15	0.008396971	50.035732	24
ATCGTGG	50	3.783498E-10	45.032158	26
TCCTAGG	40	1.495373E-7	43.781265	25
ATCCTAG	45	3.76951E-7	38.91668	24
TGCAGTG	145	0.0	38.405853	23
AGTTGCA	150	0.0	37.116142	20
TCCCTGA	35	1.4074703E-4	36.161358	23
GATACGG	55	1.6370905E-11	35.989975	4
GGTACCA	705	0.0	35.989975	4
GTACCAT	160	0.0	35.989975	5
GTACCAC	205	0.0	35.989975	5
GGTAAGG	30	1.0021107E-5	35.989975	4
GTACACG	335	0.0	35.989975	5
AGATACT	40	4.8677975E-8	35.989975	3
CGGTTCC	55	1.6370905E-11	35.989975	3
GGTCCTA	30	1.0021107E-5	35.989975	4
GGTCCCA	25	1.4488879E-4	35.989975	4
ATACTCG	40	4.8677975E-8	35.989975	5