SRR2099041_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099041_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	379922
Sequences flagged as poor quality	0
Sequence length	43
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGTCTGCAGAAAAGGCCGACGATCGAAAAAATGCAGACTTTTT	994	0.2616326509125557	No Hit
ACTCGGCATCGATGCTGAGTGACCTTGAACAAGTCCTCCAACA	827	0.21767625986386677	No Hit
AGTCTGCATGTGTGCGCAAGCTGATCGCGGTGATCGGCGACTC	745	0.19609288222319315	No Hit
AGTCTGCAGAAAAGGCCGACGATCGNAAAAATGCAGACTTTTT	715	0.188196524549776	No Hit
AGTCTGCAGCCGCAGTTCCTCGCCGGTCTCGGGGTCGCGGAAG	691	0.18187943841104226	No Hit
AGTCTGCATGTGTGCGCAAGCTGATNGCGGTGATCGGCGACTC	568	0.14950437195003186	No Hit
ACTCGGCATCGATGCTGAGTGACCTNGAACAAGTCCTCCAACA	554	0.1458194050357705	No Hit
AGTCTGCAGCCGCAGTTCCTCGCCGNTCTCGGGGTCGCGGAAG	430	0.11318112665231284	No Hit
AGTCTGCCGCGAGGCTGGGAAAACTGGATATCCACATACAAAA	417	0.10975937166049873	No Hit
AGATTGCAACGTTGCAGCAGCGGCGCCTTGTCGCTGGTTGCGC	392	0.10317907359931776	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGATA	25	1.5114525E-5	52.78369	23
TCCGTAA	75	0.0	45.131157	25
CCGTAAA	70	0.0	44.63521	26
ATCGCGC	30	4.8100148E-5	43.39534	24
CCTGCGT	25	9.6050015E-4	42.226955	20
CTTAGAG	25	9.6050015E-4	42.226955	21
ATCCGTA	85	0.0	39.821606	24
ATCGCGG	315	0.0	38.849163	24
TGACCTT	160	0.0	37.93828	20
GACCTTG	160	0.0	37.93828	21
TGATCGC	315	0.0	37.70264	22
GAGCTGT	70	1.4551915E-10	37.702637	23
TCGCGGT	325	0.0	37.653805	25
AAATTGC	35	1.1931725E-4	37.196007	26
TCGCGCC	35	1.1931725E-4	37.196007	25
GATCGCG	370	0.0	37.091248	23
ACCTTGA	165	0.0	36.788635	22
TCGGGGC	80	1.8189894E-11	35.801155	26
TGCCCTA	30	1.1029739E-5	35.494602	5
CTGCGAG	45	3.916284E-9	35.494602	4