FastQCFastQC Report
Thu 26 May 2016
SRR2099037_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2099037_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences227656
Sequences flagged as poor quality0
Sequence length43
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGTACCGTGAAATGGATGTATCTAGACGTATTTTAGTTCT8850.38874442140773796No Hit
ATCGGTACCGTGAAATGGATGTATCNAGACGTATTTTAGTTCT6170.27102294690234385No Hit
ATCGGTACGTATATGGTTGAGCTAATTAATGACTCTGTTCCGA3460.15198369469726253No Hit
ATCGGTGAAGTCAAAAGAACCGAGCTTGCACTGATTTTTTGAC3370.1480303615982008No Hit
ATCGGTACTTACCGTTTAGGAATCTCCCCTCCAGGCTGTTTCA2950.1295814738025793No Hit
ATCGGTACGTATATGGTTGAGCTAANTAATGACTCTGTTCCGA2490.10937554907404154No Hit
ATCGGTACCTAGTGGTCCCAACTACTTGGGAGGCTGAGGCAGG2330.10234740134237623No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGTTT150.00796190150.7085522
AGGCTAT150.00796190150.7085521
AGCCACG204.083013E-450.22065724
GCCACGT204.083013E-450.22065725
CTAAACC150.00827219750.22065424
GTATCTA2300.046.2991121
TAGACGT2450.046.12101426
TGTATCT2350.045.31402220
CTAGACG2500.045.1985925
TATCTAG2400.044.3699822
ATCTAGA2550.042.7542723
TCTAGAC2700.041.85054424
TCTGCGG250.001225606840.17652526
CAACGAA250.001225606840.17652525
AATCTCC705.456968E-1239.8424321
GGTAATC502.4738256E-1035.8817634
GTCCTTT251.4737876E-435.8817635
GGTCCTC502.4738256E-1035.8817634
GGTCCAC453.5088306E-935.8817634
GTTACGT502.4738256E-1035.8817634