SRR2099037_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099037_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	227656
Sequences flagged as poor quality	0
Sequence length	43
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGTACCGTGAAATGGATGTATCTAGACGTATTTTAGTTCT	885	0.38874442140773796	No Hit
ATCGGTACCGTGAAATGGATGTATCNAGACGTATTTTAGTTCT	617	0.27102294690234385	No Hit
ATCGGTACGTATATGGTTGAGCTAATTAATGACTCTGTTCCGA	346	0.15198369469726253	No Hit
ATCGGTGAAGTCAAAAGAACCGAGCTTGCACTGATTTTTTGAC	337	0.1480303615982008	No Hit
ATCGGTACTTACCGTTTAGGAATCTCCCCTCCAGGCTGTTTCA	295	0.1295814738025793	No Hit
ATCGGTACGTATATGGTTGAGCTAANTAATGACTCTGTTCCGA	249	0.10937554907404154	No Hit
ATCGGTACCTAGTGGTCCCAACTACTTGGGAGGCTGAGGCAGG	233	0.10234740134237623	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCGTTT	15	0.007961901	50.70855	22
AGGCTAT	15	0.007961901	50.70855	21
AGCCACG	20	4.083013E-4	50.220657	24
GCCACGT	20	4.083013E-4	50.220657	25
CTAAACC	15	0.008272197	50.220654	24
GTATCTA	230	0.0	46.29911	21
TAGACGT	245	0.0	46.121014	26
TGTATCT	235	0.0	45.314022	20
CTAGACG	250	0.0	45.19859	25
TATCTAG	240	0.0	44.36998	22
ATCTAGA	255	0.0	42.75427	23
TCTAGAC	270	0.0	41.850544	24
TCTGCGG	25	0.0012256068	40.176525	26
CAACGAA	25	0.0012256068	40.176525	25
AATCTCC	70	5.456968E-12	39.84243	21
GGTAATC	50	2.4738256E-10	35.881763	4
GTCCTTT	25	1.4737876E-4	35.881763	5
GGTCCTC	50	2.4738256E-10	35.881763	4
GGTCCAC	45	3.5088306E-9	35.881763	4
GTTACGT	50	2.4738256E-10	35.881763	4