Basic Statistics
Measure | Value |
---|---|
Filename | SRR2099037_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 227656 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGTACCGTGAAATGGATGTATCTAGACGTATTTTAGTTCT | 885 | 0.38874442140773796 | No Hit |
ATCGGTACCGTGAAATGGATGTATCNAGACGTATTTTAGTTCT | 617 | 0.27102294690234385 | No Hit |
ATCGGTACGTATATGGTTGAGCTAATTAATGACTCTGTTCCGA | 346 | 0.15198369469726253 | No Hit |
ATCGGTGAAGTCAAAAGAACCGAGCTTGCACTGATTTTTTGAC | 337 | 0.1480303615982008 | No Hit |
ATCGGTACTTACCGTTTAGGAATCTCCCCTCCAGGCTGTTTCA | 295 | 0.1295814738025793 | No Hit |
ATCGGTACGTATATGGTTGAGCTAANTAATGACTCTGTTCCGA | 249 | 0.10937554907404154 | No Hit |
ATCGGTACCTAGTGGTCCCAACTACTTGGGAGGCTGAGGCAGG | 233 | 0.10234740134237623 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGCGTTT | 15 | 0.007961901 | 50.70855 | 22 |
AGGCTAT | 15 | 0.007961901 | 50.70855 | 21 |
AGCCACG | 20 | 4.083013E-4 | 50.220657 | 24 |
GCCACGT | 20 | 4.083013E-4 | 50.220657 | 25 |
CTAAACC | 15 | 0.008272197 | 50.220654 | 24 |
GTATCTA | 230 | 0.0 | 46.29911 | 21 |
TAGACGT | 245 | 0.0 | 46.121014 | 26 |
TGTATCT | 235 | 0.0 | 45.314022 | 20 |
CTAGACG | 250 | 0.0 | 45.19859 | 25 |
TATCTAG | 240 | 0.0 | 44.36998 | 22 |
ATCTAGA | 255 | 0.0 | 42.75427 | 23 |
TCTAGAC | 270 | 0.0 | 41.850544 | 24 |
TCTGCGG | 25 | 0.0012256068 | 40.176525 | 26 |
CAACGAA | 25 | 0.0012256068 | 40.176525 | 25 |
AATCTCC | 70 | 5.456968E-12 | 39.84243 | 21 |
GGTAATC | 50 | 2.4738256E-10 | 35.881763 | 4 |
GTCCTTT | 25 | 1.4737876E-4 | 35.881763 | 5 |
GGTCCTC | 50 | 2.4738256E-10 | 35.881763 | 4 |
GGTCCAC | 45 | 3.5088306E-9 | 35.881763 | 4 |
GTTACGT | 50 | 2.4738256E-10 | 35.881763 | 4 |