SRR2099029_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099029_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	117231
Sequences flagged as poor quality	0
Sequence length	42
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACTACGTTGCGGACTACGTTTTTTTTTTTTTTTTTTTTTTT	236	0.2013119396746594	No Hit
GACTACGTGTTTGCCACACCCATGTCATGTTGCCTCGATATG	187	0.15951412169136148	No Hit
GACTACGTTGCGGACTACGTTTTTNTTTTTTTTTTTTTTTTT	144	0.12283440386928372	No Hit
GACTACGTCAAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTT	136	0.11601027032099019	No Hit
GACTACGTGTTTGCCACACCCATGNCATGTTGCCTCGATATG	134	0.1143042369339168	No Hit
GACTACGTGTGCGGGGTTGGGACGTGAGAATACTCATGGGTG	121	0.1032150199179398	No Hit
GACTACGTCTTTAGAGAAGTGGGGAGGGGTCTCGGATTTTAT	119	0.10150898653086642	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGGCGG	35	4.343201E-8	51.15855	19
GAAGCGG	15	0.008060303	50.526966	24
CGAAGCG	15	0.008060303	50.526966	23
CGGCAAG	35	4.7908543E-8	50.526962	23
CGGCGGC	45	3.133191E-7	39.789986	20
GGCGGCA	45	3.133191E-7	39.789986	21
GCGGCAA	50	7.1541035E-7	35.810986	22
GCAAGAT	50	7.8863013E-7	35.368877	25
GGCAAGA	50	7.8863013E-7	35.368877	24
GGATACG	20	0.002379638	35.090706	1
TGCTACG	20	0.002379638	35.090706	1
AACTACC	20	0.002379638	35.090706	1
GATTACG	20	0.002379638	35.090706	1
GCCCACG	30	1.1854643E-5	35.090702	1
CACTACG	65	0.0	35.090702	1
GAGCACG	125	0.0	35.090702	1
GGCTCCG	45	4.321919E-9	35.090702	1
GACTAAG	155	0.0	35.090702	1
GGCTACG	170	0.0	35.090702	1
CGTGGTA	25	1.747298E-4	34.839157	6