SRR2099024_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099024_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	412437
Sequences flagged as poor quality	0
Sequence length	43
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTAAGCTCCACTGCACCTAACTCTCAAGAGACTGGAGGTCTC	549	0.13311123880738152	No Hit
CGTAAGCTGTTTCATGCTAGCTCCCTTTCCATTCCTTTCTCTC	488	0.11832110116211689	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGGGTA	90	0.0	40.8657	26
CCATAAG	35	1.0465618E-4	38.034763	21
CAGCCTA	65	2.6993803E-9	36.864468	22
GCCTACA	65	2.6993803E-9	36.864468	23
GGCCTAC	65	2.6993803E-9	36.864468	22
AAGGTCG	25	1.5372763E-4	35.634197	4
AAGCCGG	95	0.0	35.634197	4
AGCATCG	25	1.5372763E-4	35.634197	5
ACGCTTC	130	0.0	35.634197	4
AGCCTCG	30	1.0739126E-5	35.634197	5
AGCCGGT	20	0.0022136439	35.634193	5
CGCTCTT	20	0.0022136439	35.634193	5
CGCTCTA	20	0.0022136439	35.634193	5
ACGCTTA	90	0.0	35.634193	4
AGCTGCG	715	0.0	35.634193	5
CGCTTTC	40	5.322545E-8	35.634193	5
CGTATGA	20	0.0022497035	35.517067	1
CGTATCC	20	0.0022497035	35.517067	1
CCTACGC	90	0.0	35.517067	1
CATACGC	30	1.0984273E-5	35.517067	1