Basic Statistics
Measure | Value |
---|---|
Filename | SRR2099023_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 279151 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTCAGTACTCGAGACGATCTCGAACTATACCACAGTGACTACG | 283 | 0.10137882364741663 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATACGG | 20 | 0.0020938604 | 36.036198 | 4 |
GATACGC | 30 | 9.932282E-6 | 36.036198 | 4 |
GATACGA | 20 | 0.0020938604 | 36.036198 | 4 |
GGTACGC | 1360 | 0.0 | 36.036198 | 4 |
GGTACCG | 1810 | 0.0 | 36.036198 | 4 |
GGTAACG | 70 | 0.0 | 36.036198 | 4 |
GGGTACG | 35 | 6.897553E-7 | 36.036198 | 3 |
CGTTACG | 45 | 3.3705874E-9 | 36.036198 | 3 |
GGTGCAT | 35 | 6.897553E-7 | 36.036198 | 4 |
GTCCCGG | 20 | 0.0020938604 | 36.036198 | 5 |
CGATACG | 85 | 0.0 | 36.036198 | 3 |
AGTACGC | 20 | 0.0020938604 | 36.036198 | 4 |
GTACGGG | 315 | 0.0 | 36.036198 | 5 |
GTACGCA | 265 | 0.0 | 36.036198 | 5 |
AGGTACG | 55 | 1.6370905E-11 | 36.036194 | 3 |
GATACCC | 25 | 1.4378835E-4 | 36.036194 | 4 |
GGTACGT | 1195 | 0.0 | 36.036194 | 4 |
GGTACGG | 1520 | 0.0 | 36.036194 | 4 |
GTACCCC | 535 | 0.0 | 36.036194 | 5 |
GGTAACT | 25 | 1.4378835E-4 | 36.036194 | 4 |