SRR2099017_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099017_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	139234
Sequences flagged as poor quality	0
Sequence length	43
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCTAGCAAAAAGGACTGTAGAACTCTGAACCCCTATAGTGA	425	0.3052415358317652	Illumina DpnII expression Adapter 1 (95% over 21bp)
GATCTAGCAAAGAAGATCTCTTTGATCGTCGGACTGTAGAACT	276	0.19822744444604046	No Hit
GATCTAGCAAAAAGGACTGTAGAACNCTGAACCCCTATAGTGA	272	0.19535458293232977	No Hit
GATCCATCGCCCAGCCCGGGCCCGCAATCTGCTGGCCTGCGCC	221	0.15872559863251792	No Hit
GATCTAGCAAAGAAGATCTCTTTGANCGTCGGACTGTAGAACT	201	0.14436129106396425	No Hit
GATCAAACTCAGAGTTCAGATCCATGGTTTGATCTCTGAGATC	173	0.12425126046798914	No Hit
GATCTAGCGGCGTGTTGAGCTCAAAGCCAGTGTGGTGTGTATA	173	0.12425126046798914	No Hit
GATCTAGCAAAGAAGTGAGTCGTATTACCGGCCGACGATCAAA	170	0.12209661433270609	No Hit
GATCCATCGCCCAGCCCGGGCCCGCNATCTGCTGGCCTGCGCC	164	0.11778732206213999	No Hit
GATCTAGCAGAAAGAGTCGTATTACCGGCCGACGATCAAAAAG	160	0.11491446054842927	No Hit
GATCTAGCTTATGGTCCGACGATCAGACTGATCTAGCTTTTTT	154	0.11060516827786317	No Hit
GATCTAGCAAAGAAGTGAGTCGTATNACCGGCCGACGATCAAA	150	0.10773230676415244	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACTTAT	40	1.0847543E-7	45.560276	21
TATGTAA	40	1.2175042E-7	44.89749	25
ATCCTCC	30	5.2221996E-5	42.75952	25
ACTTATG	45	2.736415E-7	40.498024	22
TTATGTA	45	3.0705087E-7	39.908886	24
ATGTAAG	50	7.011222E-7	35.917995	26
TAGCGTG	100	0.0	35.641468	5
TAGCGTA	85	0.0	35.641468	5
TAGCGGT	120	0.0	35.641468	5
TAGCGGG	70	0.0	35.641468	5
TAGCGCT	150	0.0	35.641468	5
TAGCGCA	100	0.0	35.641468	5
TAACGAC	35	7.4812306E-7	35.641468	5
TAGCCTG	110	0.0	35.641468	5
TAGCCGT	120	0.0	35.641468	5
TAGCATG	65	0.0	35.641468	5
TAGCAGC	100	0.0	35.641468	5
TAGCAAC	165	0.0	35.641468	5
CTAACAT	30	1.0671172E-5	35.641468	4
TCTAACA	210	0.0	35.641468	3