SRR2099015_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099015_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	167430
Sequences flagged as poor quality	0
Sequence length	43
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCATTCGAGACGCGAGTCGTATTACCGGCCGACGATCGAATGC	458	0.2735471540345219	No Hit
GCATTCGAGACGCGAGTCGTATTACNGGCCGACGATCGAATGC	348	0.20784805590395986	No Hit
GCATTCGAGACATACGACTCACTATAGCGAGTCGTATTACCGG	335	0.20008361703398436	No Hit
GCATTCGAGCTGCGAGAGGCCCTTGGTCTTGTTAAGGCTTTAT	271	0.16185868721256644	No Hit
GCATTCGAGACATACGACTCACTATNGCGAGTCGTATTACCGG	207	0.12363375739114853	No Hit
GCATTCGAACGGCCACAGAACCACTTTGTCATATGAACAAAGA	181	0.10810487965119751	No Hit
GCATTCGATGTCTGGTTGGTGGCCCTGGCTGCAGCAGAGGGTT	180	0.10750761512273786	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGACCA	15	0.0070810015	52.224808	21
GATCACA	20	3.5869746E-4	51.5432	26
CCTAGCA	25	0.0010771772	41.234562	26
GCCTAGC	25	0.0010771772	41.234562	25
TATAGCG	165	0.0	37.981678	23
CTATAGC	160	0.0	37.53658	22
GCCGGTT	35	1.2628583E-4	36.816574	25
TCGCTCG	30	1.0836926E-5	35.568016	5
TCGCTAA	30	1.0836926E-5	35.568016	5
CTTCGCA	25	1.5500956E-4	35.568012	3
ATTCGTT	35	7.615927E-7	35.568012	3
ATTCGGT	105	0.0	35.568012	3
ATTCGAC	2280	0.0	35.568012	3
TCGATGC	180	0.0	35.568012	5
TGCGATG	20	0.0022300144	35.568012	4
TACGAGC	20	0.0022300144	35.568012	4
TACGAGA	20	0.0022300144	35.568012	4
TCGCTTC	35	7.615927E-7	35.568012	5
TTCGGGG	25	1.5500956E-4	35.568012	4
TTCGGCG	25	1.5500956E-4	35.568012	4